Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28j09
         (270 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces...    69   9e-14
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    27   0.35 
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   0.46 
SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot...    26   1.1  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    25   1.4  
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po...    25   1.9  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    24   4.3  
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    23   5.7  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    23   5.7  
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac...    23   7.5  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    23   7.5  
SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1...    23   7.5  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    23   9.9  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    23   9.9  

>SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 51

 Score = 69.3 bits (162), Expect = 9e-14
 Identities = 29/51 (56%), Positives = 37/51 (72%)
 Frame = +1

Query: 58  MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKXXXXXXTKLKL 210
           M +HK+F  K+KLAK  +QNRPIPQW+R+RTGNT+ YN K      TKL +
Sbjct: 1   MPSHKSFRTKQKLAKAARQNRPIPQWIRLRTGNTVHYNMKRRHWRRTKLNI 51


>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 27.5 bits (58), Expect = 0.35
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 222 FXSLQLELCPSPXTPLSVISNSVSCAHPYPL 130
           + S+ L    +P TP S  +N V CA P PL
Sbjct: 332 YSSIPLPAERNPKTPQSFSTNIVQCASPSPL 362


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.1 bits (57), Expect = 0.46
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 192  SPXTPLSVISNSVSCAHPYPLRNGS 118
            +P TP++V S++V+ AH Y    GS
Sbjct: 982  NPYTPIAVASSTVNPAHTYKPHGGS 1006


>SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein
           1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -1

Query: 180 PLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRLMGRHFEQSSC 40
           P  +I +S S  HP PL +G VL +   +   NNK  +   +   SC
Sbjct: 109 PAMLILDSKSI-HPLPLTDGEVLHRWECEVDSNNKTTIDLKYWYCSC 154


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -2

Query: 254 YRVFIRLHLTHSQAYNLSFVLLQXRLLALYRIV 156
           YRVFI LHL    A   +FVL +  L  +Y I+
Sbjct: 236 YRVFIELHLNEEIA--AAFVLQKPILPLIYNIL 266


>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 269 FFFGLYRVFIRLHLTHSQAYNLS 201
           FFFG  R  + L+ TH++ ++LS
Sbjct: 364 FFFGTDRYSLPLYKTHARRFSLS 386


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = -2

Query: 236 LHLTHSQAYNLSFVLLQXRLLALYRIVFPV 147
           LH+ H + Y +S +L +   +  Y+++ P+
Sbjct: 73  LHIGHVRVYTISDILSRYYRMKGYKVIHPM 102


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 70  KTFIIKRKLAKKLKQNRPIPQW 135
           +T  +K+KL K    NRP+P W
Sbjct: 18  RTITVKQKLGK----NRPLPGW 35


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 62   RPIRRLLLSANWPKS*NKTD 121
            RP++ +L   N PKS  K D
Sbjct: 1791 RPVKNVLFETNVPKSLRKVD 1810


>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 483

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 183 TPLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNK 76
           TP  +I+  +   H   L   S L + +GQ A NNK
Sbjct: 352 TPSGLITPVIRNTHALGLAEISTLAKDYGQRARNNK 387


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 108 QLFGQFALNNKRLMGRHFEQSSCQNKXQ 25
           Q+  Q  +++K LMG H E +   N  Q
Sbjct: 401 QIVAQTHIDSKSLMGLHIELAPAANDIQ 428


>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 484

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 110 FSFLANLRLIINVLWADILNNQVV 39
           + F  ++ +IIN  W D  N  VV
Sbjct: 256 YDFPEDMNMIINCEWCDFDNQHVV 279


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 177 LSVISNSVSCAHPYPL 130
           L++++ S  C HP+PL
Sbjct: 493 LALVTTSQVCRHPHPL 508


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 245 FIRLHLTHSQAYNLSFVL 192
           FI+L  T   A+NL FVL
Sbjct: 160 FIKLFYTFQDAHNLYFVL 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 979,346
Number of Sequences: 5004
Number of extensions: 15901
Number of successful extensions: 47
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 57602552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)