Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28j09
(270 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0572 - 4044610-4044658,4044754-4044857,4044942-4044944 77 3e-15
02_05_1078 + 33946902-33946904,33947006-33947109,33947206-33947254 77 3e-15
02_05_1076 + 33932543-33932545,33932643-33932746,33932859-33932907 77 3e-15
11_06_0478 + 24073295-24074172,24074790-24075090 29 0.67
12_01_0282 - 2088302-2089081 27 2.7
11_01_0273 - 2048527-2049297 27 2.7
04_04_1353 - 32836301-32836340,32836514-32836657,32836948-328370... 27 2.7
06_03_0375 + 20052687-20053214,20053943-20054110,20054272-200543... 26 3.6
05_03_0242 + 10823312-10823342,10823662-10823732,10824010-108240... 26 3.6
05_01_0398 + 3142934-3143110,3143697-3143930,3144180-3144353,314... 26 4.7
04_03_0998 - 21555696-21556080,21556177-21556254,21556333-215564... 25 6.3
08_02_0946 + 22880399-22880600,22881588-22881650,22881786-228817... 25 8.3
04_04_0930 - 29480700-29480853,29481007-29483036 25 8.3
02_05_0046 - 25398412-25398594,25399022-25399060,25399896-254003... 25 8.3
>06_01_0572 - 4044610-4044658,4044754-4044857,4044942-4044944
Length = 51
Score = 76.6 bits (180), Expect = 3e-15
Identities = 34/49 (69%), Positives = 39/49 (79%)
Frame = +1
Query: 58 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKXXXXXXTKL 204
M +HKTF IK+KLAKK++QNRPIP W+RMRT NTIRYNAK TKL
Sbjct: 1 MPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 49
>02_05_1078 + 33946902-33946904,33947006-33947109,33947206-33947254
Length = 51
Score = 76.6 bits (180), Expect = 3e-15
Identities = 34/49 (69%), Positives = 39/49 (79%)
Frame = +1
Query: 58 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKXXXXXXTKL 204
M +HKTF IK+KLAKK++QNRPIP W+RMRT NTIRYNAK TKL
Sbjct: 1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 49
>02_05_1076 + 33932543-33932545,33932643-33932746,33932859-33932907
Length = 51
Score = 76.6 bits (180), Expect = 3e-15
Identities = 34/49 (69%), Positives = 39/49 (79%)
Frame = +1
Query: 58 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKXXXXXXTKL 204
M +HKTF IK+KLAKK++QNRPIP W+RMRT NTIRYNAK TKL
Sbjct: 1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 49
>11_06_0478 + 24073295-24074172,24074790-24075090
Length = 392
Score = 28.7 bits (61), Expect = 0.67
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +2
Query: 41 QLDCSKCRPIRRLLLSANWPKS*NKTDPFLSG*GCAQETLF 163
QL C C + LSA WP K D F S G +E +F
Sbjct: 207 QLFCLMCWQVEYQYLSAEWPPPSYKIDAFSSRTGRWEERVF 247
>12_01_0282 - 2088302-2089081
Length = 259
Score = 26.6 bits (56), Expect = 2.7
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = -1
Query: 201 LCPS-PXTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRLM-GRHFEQSS 43
LCP P TPL + V HP+ LR + +L+N RL+ GR SS
Sbjct: 37 LCPYLPATPLPTSTTVVILHHPHALRRNPLSTLPLLARSLSNLRLIPGRRLLPSS 91
>11_01_0273 - 2048527-2049297
Length = 256
Score = 26.6 bits (56), Expect = 2.7
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = -1
Query: 201 LCPS-PXTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRLM-GRHFEQSS 43
LCP P TPL + V HP+ LR + +L+N RL+ GR SS
Sbjct: 37 LCPYLPATPLPTSTTVVVLHHPHALRRNPLSTLPLLARSLSNLRLIPGRRLLPSS 91
>04_04_1353 -
32836301-32836340,32836514-32836657,32836948-32837023,
32838281-32838351,32838552-32838623,32839347-32839474,
32839561-32839637,32839712-32839805,32840239-32840324,
32840836-32840911,32841004-32841318
Length = 392
Score = 26.6 bits (56), Expect = 2.7
Identities = 18/75 (24%), Positives = 34/75 (45%)
Frame = -1
Query: 267 FFWTLQGFY*ITFNXFXSLQLELCPSPXTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFA 88
FF +QGF ++ +L+ S ++++++ ++ + P P + LFG+F
Sbjct: 211 FFLVVQGFLVGSYGLTWALKNS---SKVLKVAILNSPLTVSSPVPGLFNQLRLPLFGEFT 267
Query: 87 LNNKRLMGRHFEQSS 43
N L R E S
Sbjct: 268 CQNAVLAERFIEAGS 282
>06_03_0375 +
20052687-20053214,20053943-20054110,20054272-20054354,
20054541-20054610,20054973-20055077
Length = 317
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 195 PSPXTPLSVISNSVSCAHPYPLRNGSVLFQLFGQF 91
PSP P + ++ + A LR G V F FGQF
Sbjct: 53 PSPSEPTTAAASPATAAAAGALRVGIVGFGNFGQF 87
>05_03_0242 +
10823312-10823342,10823662-10823732,10824010-10824021,
10827329-10827394,10827564-10827766,10827977-10828266,
10828377-10828468,10829876-10830344,10830670-10830978,
10831290-10831364,10831457-10831614
Length = 591
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 8 FKYVHYCXLF*QLDCSKCRPIRRLLLSANWP 100
F Y HYC F +L ++ R + L+++ + P
Sbjct: 356 FTYPHYCSCFMKLPTAEARSVYILMMAQSLP 386
>05_01_0398 +
3142934-3143110,3143697-3143930,3144180-3144353,
3144450-3144554,3145274-3145351,3146019-3146100,
3146519-3146681,3147100-3147435,3147511-3147641,
3147687-3147729,3147826-3148444,3148523-3148588,
3149103-3149265,3149557-3149635,3150232-3150431,
3150972-3151144,3151466-3151559,3152353-3152444,
3153146-3153436
Length = 1099
Score = 25.8 bits (54), Expect = 4.7
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -2
Query: 197 VLLQXRLLALYRIVFPVRILTH*GMGLFCFSFLANLRLIINVLWADI 57
V LQ RL + IL+H +GLFC F +R + V +AD+
Sbjct: 770 VSLQARLARFQHRLKEQEILSHAWLGLFCQFFHCMMRRVTTV-FADM 815
>04_03_0998 - 21555696-21556080,21556177-21556254,21556333-21556424,
21556524-21556620,21557113-21557141,21557620-21557781,
21557981-21558061,21558156-21558314,21558394-21558510,
21558598-21558666,21558753-21558831,21560884-21561050,
21561109-21561229,21561522-21561649,21562293-21562361,
21562408-21562539,21562619-21562991,21563274-21563398,
21563500-21563655,21563785-21564198,21564634-21564691,
21566522-21566648,21568047-21568305,21569005-21569104,
21569231-21569317,21569454-21569692,21569914-21569999,
21570409-21570532,21571111-21574332
Length = 2444
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 81 Y*AQIGQKAETKQTHSSVGKDAHRKHYSI*R*EASLEKD 197
Y A++ Q E +Q+HS AH+ H+ +S KD
Sbjct: 1679 YTARLTQDEERQQSHSMASTTAHQGHHPTSILSSSFVKD 1717
>08_02_0946 +
22880399-22880600,22881588-22881650,22881786-22881790,
22882143-22882253,22882339-22882443,22882529-22882609,
22883236-22883247,22883680-22883733,22884476-22884586,
22884789-22884935
Length = 296
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -1
Query: 210 QLELCPSPXTPLSVISNSVSCAHPYPLRNGSVL 112
Q LCP P T +I N C YP + VL
Sbjct: 219 QSHLCPLPLTVQPIIWNYDHCLRLYPTPHTIVL 251
>04_04_0930 - 29480700-29480853,29481007-29483036
Length = 727
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = -2
Query: 116 FCFSFLANLRLII 78
FCFSF+A+L LII
Sbjct: 9 FCFSFVASLALII 21
>02_05_0046 -
25398412-25398594,25399022-25399060,25399896-25400360,
25400758-25400816,25400920-25401748,25402554-25402898,
25402973-25403435,25403537-25403640,25403692-25403901,
25404933-25405088,25405774-25406052,25406237-25406986,
25407141-25407232,25407977-25408361,25408672-25408752,
25409196-25409354,25409399-25409506,25409604-25409666,
25409764-25409835,25409932-25410366
Length = 1758
Score = 25.0 bits (52), Expect = 8.3
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = -2
Query: 119 LFCFSFLANLRLIINVLWADILNNQV 42
++ F F N I++V+W +IL ++
Sbjct: 286 VYLFEFHGNAHAIVSVIWTNILGKRL 311
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,917,980
Number of Sequences: 37544
Number of extensions: 92733
Number of successful extensions: 221
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 14,793,348
effective HSP length: 68
effective length of database: 12,240,356
effective search space used: 257047476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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