Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28j09
(270 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53148-4|AAB37070.1| 51|Caenorhabditis elegans Ribosomal prote... 76 3e-15
AF303271-1|AAG50229.1| 51|Caenorhabditis elegans ribosomal pro... 76 3e-15
U64858-8|AAB18286.3| 288|Caenorhabditis elegans Serpentine rece... 27 1.8
Z74472-5|CAA98943.1| 802|Caenorhabditis elegans Hypothetical pr... 26 3.2
AF039037-4|AAC48229.3| 311|Caenorhabditis elegans Protein kinas... 26 3.2
Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical p... 26 4.2
AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical ... 26 4.2
AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical ... 26 4.2
Z22179-9|CAD90178.1| 428|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z22179-8|CAA80170.2| 431|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z22179-7|CAA80167.2| 429|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z71178-13|CAF31498.1| 342|Caenorhabditis elegans Hypothetical p... 25 7.3
Z71178-11|CAA94885.2| 309|Caenorhabditis elegans Hypothetical p... 25 7.3
AF068709-4|AAC19253.2| 297|Caenorhabditis elegans Serpentine re... 25 7.3
Z75527-8|CAA99778.2| 316|Caenorhabditis elegans Hypothetical pr... 25 9.7
U61946-2|AAC24387.1| 341|Caenorhabditis elegans Serpentine rece... 25 9.7
>U53148-4|AAB37070.1| 51|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 39 protein.
Length = 51
Score = 76.2 bits (179), Expect = 3e-15
Identities = 36/51 (70%), Positives = 40/51 (78%)
Frame = +1
Query: 58 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKXXXXXXTKLKL 210
MSA K IKRKLAKK KQNRP+PQWVRM+TGNT++YNAK TKLKL
Sbjct: 1 MSALKKSFIKRKLAKKQKQNRPMPQWVRMKTGNTMKYNAKRRHWRRTKLKL 51
>AF303271-1|AAG50229.1| 51|Caenorhabditis elegans ribosomal
protein L39 protein.
Length = 51
Score = 76.2 bits (179), Expect = 3e-15
Identities = 36/51 (70%), Positives = 40/51 (78%)
Frame = +1
Query: 58 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKXXXXXXTKLKL 210
MSA K IKRKLAKK KQNRP+PQWVRM+TGNT++YNAK TKLKL
Sbjct: 1 MSALKKSFIKRKLAKKQKQNRPMPQWVRMKTGNTMKYNAKRRHWRRTKLKL 51
>U64858-8|AAB18286.3| 288|Caenorhabditis elegans Serpentine
receptor, class t protein25 protein.
Length = 288
Score = 27.1 bits (57), Expect = 1.8
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Frame = -2
Query: 263 FGLYRVFIRLHLTHSQAYNLSFVLLQXRLLALYRIVF---PVRI--LTH*GMGLFCFSFL 99
+G++ VF+ + LS + LLA VF PV I L G+GL+C S
Sbjct: 24 YGIFMVFLMFVVGIVDMLALSMNSISTGLLAYQGAVFCTYPVFIYFLGLAGLGLWCCSCF 83
Query: 98 ANLRLIIN 75
N+ L++N
Sbjct: 84 MNILLLVN 91
>Z74472-5|CAA98943.1| 802|Caenorhabditis elegans Hypothetical
protein F23H12.5 protein.
Length = 802
Score = 26.2 bits (55), Expect = 3.2
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = -1
Query: 192 SPXTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRLMGRHFEQSSCQN 34
S PLSVIS+S S P+ + +++ ++ + + +G + E SC +
Sbjct: 19 SQYEPLSVISSSWSMWSPWSFCSNNLMIRVRACSTVRGYKCLGHNKEFQSCNS 71
>AF039037-4|AAC48229.3| 311|Caenorhabditis elegans Protein kinase
protein 34 protein.
Length = 311
Score = 26.2 bits (55), Expect = 3.2
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = -1
Query: 207 LELCPSPXTPLSVISNSVSCAHPY----PLRNGSVLFQLFGQFALNNKR 73
L++ P P +PLSV++N PY PL GS FGQ AL + R
Sbjct: 4 LQVVPPPISPLSVLANHPD--RPYEVLKPLGQGS-----FGQVALVSNR 45
>Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical
protein C24F3.5 protein.
Length = 1479
Score = 25.8 bits (54), Expect = 4.2
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -2
Query: 260 GLYRVFIRLHLTHSQAYNLSFVLLQXRLLALYRIVFPVRILTH*GMGLFCFSFL 99
G Y +F+ LH + FV L + IVF V +L +FC ++L
Sbjct: 169 GYYNMFLSLHARRFHYFIAKFVFWYGIALIISLIVFIVNVLV--VPAVFCSTYL 220
>AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical
protein C24F3.5 protein.
Length = 1479
Score = 25.8 bits (54), Expect = 4.2
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -2
Query: 260 GLYRVFIRLHLTHSQAYNLSFVLLQXRLLALYRIVFPVRILTH*GMGLFCFSFL 99
G Y +F+ LH + FV L + IVF V +L +FC ++L
Sbjct: 169 GYYNMFLSLHARRFHYFIAKFVFWYGIALIISLIVFIVNVLV--VPAVFCSTYL 220
>AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical
protein C24F3.5 protein.
Length = 1479
Score = 25.8 bits (54), Expect = 4.2
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -2
Query: 260 GLYRVFIRLHLTHSQAYNLSFVLLQXRLLALYRIVFPVRILTH*GMGLFCFSFL 99
G Y +F+ LH + FV L + IVF V +L +FC ++L
Sbjct: 169 GYYNMFLSLHARRFHYFIAKFVFWYGIALIISLIVFIVNVLV--VPAVFCSTYL 220
>Z22179-9|CAD90178.1| 428|Caenorhabditis elegans Hypothetical
protein F58A4.7c protein.
Length = 428
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 195 PSPXTPLSVISNSVSCAHPYPLRNGSVLF 109
P+P P+SV +S S + P PL ++F
Sbjct: 314 PTPLPPISVEISSPSLSTPSPLTAAPIIF 342
>Z22179-8|CAA80170.2| 431|Caenorhabditis elegans Hypothetical
protein F58A4.7b protein.
Length = 431
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 195 PSPXTPLSVISNSVSCAHPYPLRNGSVLF 109
P+P P+SV +S S + P PL ++F
Sbjct: 316 PTPLPPISVEISSPSLSTPSPLTAAPIIF 344
>Z22179-7|CAA80167.2| 429|Caenorhabditis elegans Hypothetical
protein F58A4.7a protein.
Length = 429
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 195 PSPXTPLSVISNSVSCAHPYPLRNGSVLF 109
P+P P+SV +S S + P PL ++F
Sbjct: 314 PTPLPPISVEISSPSLSTPSPLTAAPIIF 342
>Z71178-13|CAF31498.1| 342|Caenorhabditis elegans Hypothetical
protein B0024.13b protein.
Length = 342
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 269 FFFGLYRVFIRLHLTHSQAYNLSFV 195
+ GL +FI LH HS YN +++
Sbjct: 73 YAIGLLTLFICLHTVHSLIYNPNYL 97
>Z71178-11|CAA94885.2| 309|Caenorhabditis elegans Hypothetical
protein B0024.13a protein.
Length = 309
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 269 FFFGLYRVFIRLHLTHSQAYNLSFV 195
+ GL +FI LH HS YN +++
Sbjct: 73 YAIGLLTLFICLHTVHSLIYNPNYL 97
>AF068709-4|AAC19253.2| 297|Caenorhabditis elegans Serpentine
receptor, class t protein26 protein.
Length = 297
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -2
Query: 128 GMGLFCFSFLANLRLIIN 75
G+GL+C S L N+ L++N
Sbjct: 95 GLGLWCCSCLLNILLLVN 112
>Z75527-8|CAA99778.2| 316|Caenorhabditis elegans Hypothetical
protein C15C8.6 protein.
Length = 316
Score = 24.6 bits (51), Expect = 9.7
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = -2
Query: 164 RIVFPVRILTH*GMGLFCFSFLANLRL 84
+++FP +++ +G+FCFSF + +
Sbjct: 127 KLIFPDKVIYVIIIGVFCFSFFFTVNI 153
>U61946-2|AAC24387.1| 341|Caenorhabditis elegans Serpentine
receptor, class h protein220 protein.
Length = 341
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = -1
Query: 246 FY*IT-FNXFXSLQLELCPSPXTPLSVISNSVSCAHP 139
FY IT F F + + + P P I S+ C HP
Sbjct: 147 FYYITAFLFFYPIYITMPPGPEHRKDFILKSIPCLHP 183
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,433,367
Number of Sequences: 27780
Number of extensions: 89893
Number of successful extensions: 216
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 12,740,198
effective HSP length: 68
effective length of database: 10,851,158
effective search space used: 227874318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -