Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28j01
         (362 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    25   3.6  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   3.6  
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   3.6  
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ...    25   4.8  
SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase S...    25   4.8  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    24   8.3  

>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 137  ISKNTESNVEDIPSHKAXSVRKKL 208
            I K+ E  V D PS +  +VRK L
Sbjct: 1339 IGKHIEKTVNDTPSEEKATVRKNL 1362


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 821

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 84 KKMLFSFLSYTKLNMVSAPNN 22
          KK LFS L   +LN VS P N
Sbjct: 18 KKELFSLLIADELNFVSEPTN 38


>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 206 LEIEQALDAILNKNTSSID***VLVKMSNLMKNFFTE 316
           + +E  LD ++N    ++    +L+KMS++MK   TE
Sbjct: 283 MSLESPLDIVVNAGAIALP---ILLKMSSIMKKKHTE 316


>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 260 LLSWYFCLKSHQA 222
           LL+WYFC + H +
Sbjct: 175 LLNWYFCTQEHDS 187


>SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase
           Srb10 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 226 KRLLDFQFFSDAXSFMTRYVFYVRLGVFTYN 134
           K+ L+  FF+    + TRYVF++ L +   N
Sbjct: 311 KQALEHVFFTSDKLWTTRYVFFLFLFIIERN 341


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -2

Query: 247 IFV*NRIKRLLDFQFFSDAXSFMTRYVFYVRLGVF 143
           +FV N I  LL +  F  + S     VFY+ LGVF
Sbjct: 170 LFVINHILILLGY--FQCSYSVFYASVFYILLGVF 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,299,088
Number of Sequences: 5004
Number of extensions: 22006
Number of successful extensions: 47
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)