Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28j01
         (362 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0011 + 17133501-17133738,17135335-17135607,17145224-171453...    29   1.1  
11_01_0678 - 5534879-5534883,5535430-5535529,5535638-5535799,553...    27   3.4  
02_02_0255 + 8357963-8358356,8358948-8359024,8359201-8359276,835...    26   7.9  

>01_05_0011 +
           17133501-17133738,17135335-17135607,17145224-17145348,
           17145463-17145612,17145653-17145696,17145822-17146174,
           17146280-17146602,17147010-17147105
          Length = 533

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = -3

Query: 315 SVKKFFIKLDILTSTYYQSIELVFLFKIASSACSISNFFRTLLAL*LGMSSTLDSVFL 142
           S KK  + L +L    + ++ L+F F +   A SIS FF   ++L L     L  V L
Sbjct: 97  SSKKSNLFLQVLIDFIHFALALIFNFGLEGEASSISFFFNLYMSLVLIFPKRLAGVIL 154


>11_01_0678 -
           5534879-5534883,5535430-5535529,5535638-5535799,
           5536000-5536966,5537444-5537561,5538682-5538871,
           5538952-5539107,5539296-5540315
          Length = 905

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 177 VIKLXASEKNWKSSKRLMRF 236
           V++L A ++ WKSSKR  +F
Sbjct: 49  VLRLDADKERWKSSKRFKKF 68


>02_02_0255 +
           8357963-8358356,8358948-8359024,8359201-8359276,
           8359665-8359846,8360173-8360318,8360405-8360669,
           8360688-8361053,8361265-8361513
          Length = 584

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 241 QKYQLNRLIIS-AR*NVQFNEKLFHRTGQIDN 333
           QK+ + RL+    R NV   EKLFHR  Q DN
Sbjct: 271 QKHSIGRLLDDEGRPNVSVIEKLFHRIDQ-DN 301


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,494,538
Number of Sequences: 37544
Number of extensions: 114398
Number of successful extensions: 243
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)