Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28j01
         (362 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U49742-1|AAC31763.1|  348|Homo sapiens rhodopsin protein.              31   1.5  
U16824-1|AAA97436.1|  120|Homo sapiens rhodopsin protein.              31   1.5  
BX537381-1|CAD97623.1|  348|Homo sapiens hypothetical protein pr...    31   1.5  
BC112106-1|AAI12107.1|  348|Homo sapiens rhodopsin protein.            31   1.5  
BC112104-1|AAI12105.1|  348|Homo sapiens rhodopsin protein.            31   1.5  
AB065668-1|BAC05894.1|  348|Homo sapiens seven transmembrane hel...    31   1.5  

>U49742-1|AAC31763.1|  348|Homo sapiens rhodopsin protein.
          Length = 348

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -3

Query: 339 VNVVDLTSSVKKFFIKLDILTSTYYQSIELVFLFKIASSACSISNFFRTL 190
           +N + L  +V   F+ L   TST Y S+   F+F    + C++  FF TL
Sbjct: 72  LNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVF--GPTGCNLEGFFATL 119


>U16824-1|AAA97436.1|  120|Homo sapiens rhodopsin protein.
          Length = 120

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -3

Query: 339 VNVVDLTSSVKKFFIKLDILTSTYYQSIELVFLFKIASSACSISNFFRTL 190
           +N + L  +V   F+ L   TST Y S+   F+F    + C++  FF TL
Sbjct: 72  LNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVF--GPTGCNLEGFFATL 119


>BX537381-1|CAD97623.1|  348|Homo sapiens hypothetical protein
           protein.
          Length = 348

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -3

Query: 339 VNVVDLTSSVKKFFIKLDILTSTYYQSIELVFLFKIASSACSISNFFRTL 190
           +N + L  +V   F+ L   TST Y S+   F+F    + C++  FF TL
Sbjct: 72  LNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVF--GPTGCNLEGFFATL 119


>BC112106-1|AAI12107.1|  348|Homo sapiens rhodopsin protein.
          Length = 348

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -3

Query: 339 VNVVDLTSSVKKFFIKLDILTSTYYQSIELVFLFKIASSACSISNFFRTL 190
           +N + L  +V   F+ L   TST Y S+   F+F    + C++  FF TL
Sbjct: 72  LNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVF--GPTGCNLEGFFATL 119


>BC112104-1|AAI12105.1|  348|Homo sapiens rhodopsin protein.
          Length = 348

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -3

Query: 339 VNVVDLTSSVKKFFIKLDILTSTYYQSIELVFLFKIASSACSISNFFRTL 190
           +N + L  +V   F+ L   TST Y S+   F+F    + C++  FF TL
Sbjct: 72  LNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVF--GPTGCNLEGFFATL 119


>AB065668-1|BAC05894.1|  348|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 348

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -3

Query: 339 VNVVDLTSSVKKFFIKLDILTSTYYQSIELVFLFKIASSACSISNFFRTL 190
           +N + L  +V   F+ L   TST Y S+   F+F    + C++  FF TL
Sbjct: 72  LNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVF--GPTGCNLEGFFATL 119


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,195,257
Number of Sequences: 237096
Number of extensions: 677493
Number of successful extensions: 1169
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2248517154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)