Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28j01
         (362 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031627-4|CAA20957.1|  230|Caenorhabditis elegans Hypothetical ...    28   2.3  
AC084154-4|AAK29868.1|  767|Caenorhabditis elegans Hypothetical ...    26   7.0  
AC024838-1|AAF60824.1| 1100|Caenorhabditis elegans Hypothetical ...    26   7.0  
Z93395-5|CAE18034.1|  519|Caenorhabditis elegans Hypothetical pr...    26   9.3  
Z83112-6|CAE17883.1|  519|Caenorhabditis elegans Hypothetical pr...    26   9.3  

>AL031627-4|CAA20957.1|  230|Caenorhabditis elegans Hypothetical
           protein Y102A5C.13 protein.
          Length = 230

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = -3

Query: 360 LTTDTLXVNVVDLTSSVKKFFIKLDILTSTYYQSIELVFLFKIASSACSISNFFR-TLLA 184
           L T  +  N V+ +  + KF   +DI+ S  ++  + ++++ I SS   I N F  T+  
Sbjct: 94  LETIIIAQNGVENSGEICKF---IDIVESEQWKRAKSIYVYSIISSNFPIENLFHLTVFC 150

Query: 183 L*LGMSSTLDSV 148
           + LG  +  D++
Sbjct: 151 VPLGELAVSDAI 162


>AC084154-4|AAK29868.1|  767|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.7 protein.
          Length = 767

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = -3

Query: 333 VVDLTSSVKK--FFIKLDILTSTYYQSIEL-VFLFKIASSAC 217
           V  LT ++++   F KLD+ T+ YY +I + ++  ++ S  C
Sbjct: 11  VTPLTENIQETHIFNKLDVFTTVYYDAITINLYAVELLSFLC 52


>AC024838-1|AAF60824.1| 1100|Caenorhabditis elegans Hypothetical
           protein Y59E9AL.4 protein.
          Length = 1100

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -3

Query: 276 STYYQSIELVFLFKIASSA-CSISNFFRTLLAL*LGMSSTLDSVFLLIMAGLTTI 115
           +TY ++I L+ + K+AS A    + F   +L L    ++ L S+   ++ GL T+
Sbjct: 375 TTYAENIALIHITKVASRATMQFAGFILIMLGLFSKFAAILASIPDALVGGLLTM 429


>Z93395-5|CAE18034.1|  519|Caenorhabditis elegans Hypothetical
           protein ZC101.3 protein.
          Length = 519

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = -3

Query: 153 SVFLLIMAGLTTIMNTRNNMSRYKKMLFSFLSYTKLNMVS 34
           +V+L  +  L   M+  N++S    ++F+FLSY+ ++ +S
Sbjct: 159 AVWLSALPVLYVSMHETNSLSDDPFLIFTFLSYSMIHYIS 198


>Z83112-6|CAE17883.1|  519|Caenorhabditis elegans Hypothetical
           protein ZC101.3 protein.
          Length = 519

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = -3

Query: 153 SVFLLIMAGLTTIMNTRNNMSRYKKMLFSFLSYTKLNMVS 34
           +V+L  +  L   M+  N++S    ++F+FLSY+ ++ +S
Sbjct: 159 AVWLSALPVLYVSMHETNSLSDDPFLIFTFLSYSMIHYIS 198


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,080,083
Number of Sequences: 27780
Number of extensions: 120782
Number of successful extensions: 297
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)