Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28j01
         (362 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   4.5  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    21   4.5  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    21   4.5  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    21   4.5  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    21   4.5  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    21   4.5  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    21   4.5  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    21   4.5  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    21   5.9  

>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 111 NTRNNMSRYKKMLFSFLSYTKLNMVSAP 28
           N  NN + Y K L+  ++Y +   V  P
Sbjct: 96  NYNNNYNNYNKKLYYNINYIEQIPVPVP 123


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 111 NTRNNMSRYKKMLFSFLSYTKLNMVSAP 28
           N  NN + YKK+ ++ ++Y +   V  P
Sbjct: 98  NNNNNYNNYKKLYYN-INYIEQIPVPVP 124


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 111 NTRNNMSRYKKMLFSFLSYTKLNMVSAP 28
           N  NN + YKK+ ++ ++Y +   V  P
Sbjct: 98  NNNNNYNNYKKLYYN-INYIEQIPVPVP 124


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 111 NTRNNMSRYKKMLFSFLSYTKLNMVSAP 28
           N  NN + YKK+ ++ ++Y +   V  P
Sbjct: 98  NNNNNYNNYKKLYYN-INYIEQIPVPVP 124


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 111 NTRNNMSRYKKMLFSFLSYTKLNMVSAP 28
           N  NN + YKK+ ++ ++Y +   V  P
Sbjct: 98  NNNNNYNNYKKLYYN-INYIEQIPVPVP 124


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 111 NTRNNMSRYKKMLFSFLSYTKLNMVSAP 28
           N  NN + YKK+ ++ ++Y +   V  P
Sbjct: 98  NNNNNYNNYKKLYYN-INYIEQIPVPVP 124


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 111 NTRNNMSRYKKMLFSFLSYTKLNMVSAP 28
           N  NN + YKK+ ++ ++Y +   V  P
Sbjct: 98  NNNNNYNNYKKLYYN-INYIEQIPVPVP 124


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 111 NTRNNMSRYKKMLFSFLSYTKLNMVSAP 28
           N  NN + YKK+ ++ ++Y +   V  P
Sbjct: 98  NNNNNYNNYKKLYYN-INYIEQIPVPVP 124


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -3

Query: 111 NTRNNMSRYKKMLFSFLSYTKLNMVSAP 28
           N  NN + YKK+ ++ ++Y +   +  P
Sbjct: 98  NNNNNYNNYKKLYYN-INYIEQIPIPVP 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,593
Number of Sequences: 438
Number of extensions: 1412
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8556345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)