Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28i21
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit |Sch...   160   1e-40
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp...    69   6e-13
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni...    36   0.005
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    35   0.011
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    28   0.97 
SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyc...    28   1.3  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    25   6.9  
SPBC14C8.04 |||acetolactate synthase regulatory unit|Schizosacch...    25   6.9  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   9.1  
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster...    25   9.1  

>SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 311

 Score =  160 bits (389), Expect = 1e-40
 Identities = 74/166 (44%), Positives = 105/166 (63%)
 Frame = +1

Query: 127 LLLQKHSDYLASYGLNKDDYEYCMTEYLRMSGIYWSLTAMELMGQSSRMPKEDIIEFITQ 306
           LL  KH  YL   G   D+ ++ + E+L +S IYWS  +  L+ +  ++ KE I+ F+  
Sbjct: 4   LLRDKHISYLHDIGNRTDELDFWLKEHLHVSAIYWSCMSFWLLKKKDQIDKERIVSFLLS 63

Query: 307 CQDSESGGISASIGHDPHILYTLSAVQVLAMYDRLDAVDIEGIVRYIVSLQQEDGSFYGD 486
           C  +ESGG +   GHD HI  T+ AVQVLAM D L  VD + +  YI+ LQ EDGS  GD
Sbjct: 64  CL-TESGGFACYPGHDDHITNTVYAVQVLAMLDSLHVVDKDKVASYIIGLQNEDGSMKGD 122

Query: 487 KWGEIDTRFSFCAVMCLSLLQRLDAIDINKTVEFVLSCMNFDGGFG 624
           +WGEID RF +  + CL++L +LD ++ N  V++++ C NFDGGFG
Sbjct: 123 RWGEIDARFLYSGINCLAILGKLDYLNKNTAVDWLMKCYNFDGGFG 168



 Score = 52.8 bits (121), Expect = 4e-08
 Identities = 31/137 (22%), Positives = 68/137 (49%), Gaps = 1/137 (0%)
 Frame = +1

Query: 223 IYWSLTAMELMGQSSRMPKEDIIEFITQCQDSESGGISASIGHDPHILYTLSAVQVLAMY 402
           +Y  +  + ++G+   + K   ++++ +C + + GG     G + H     + V  L + 
Sbjct: 132 LYSGINCLAILGKLDYLNKNTAVDWLMKCYNFD-GGFGLCPGAESHGAMVFTCVAALKIL 190

Query: 403 DRLDAVDIEGIVRYIVSLQQEDGSFYGDKWGEIDTRFSFCAVMCLSLLQRLDAIDINKTV 582
           ++LD +D E +  +I   Q + G   G      D+ + +  +  L+++ +LD ID N+ +
Sbjct: 191 NKLDLIDEELLGWWISERQVKGGGLNGRPEKLPDSCYGWWDLSPLAIIGKLDWIDRNQLI 250

Query: 583 EFVLSCMNFD-GGFGSK 630
           +F+L   + D GGF  +
Sbjct: 251 DFLLGTQDADSGGFADR 267


>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
           Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 68.9 bits (161), Expect = 6e-13
 Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 5/167 (2%)
 Frame = +1

Query: 133 LQKHSDYLASYGLNKDDYEYCMTEYLRMSGIYWSLTAMELMGQSSRMPKEDIIEFITQCQ 312
           LQKH  YL    L+     + + +  R   +YW L+++ ++G+      E  I  + Q +
Sbjct: 31  LQKHLKYLTKM-LDPLPSPFTVLDASRAWMVYWELSSLAILGKLDSSVCERAISSVRQLK 89

Query: 313 DSESGGISASIGHDPHILYTLSAVQVLAMYDRLDA---VDIEGIVRYIVSLQQEDGSFYG 483
              SGG     G D H+L T +++  + + D  DA   ++ + +  ++ SL+  DGSF  
Sbjct: 90  -GPSGGFCGGNGQDEHLLSTYASILSICLCDSTDAYSLIERDRLYDWLFSLKNPDGSFRV 148

Query: 484 DKWGEIDTRFSFCAVMCLSLLQRLDAID--INKTVEFVLSCMNFDGG 618
           +  GE D R  + AV C+S L  +   D     T++++  C  ++GG
Sbjct: 149 NNEGESDARSVYAAV-CVSSLVGISMDDPLFEGTLQWLCKCQTYEGG 194


>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
           Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
 Frame = +1

Query: 211 RMSGIYWSLTAMELMGQS-SRMPKEDIIEFITQCQDSE----SGGISASIGHDPHILYTL 375
           +++G  +S+  +  +G + SR+ ++ I  F+  C+ S+    S  + +    D   LY  
Sbjct: 96  QLAGTVFSICCLLFLGDNLSRIDRDLIKNFVELCKTSQGHFRSIAVPSCSDQDMRQLYMA 155

Query: 376 SAVQVLAMYDRLDAVDIEGIVRYIVSLQQEDGSFYGDKWGEIDTRFSFCAVMCLSLLQRL 555
           + +  L  +   D +     ++YI S Q+ +G F    +GE     +FCA+   SL+ ++
Sbjct: 156 TTIASLLDFSLSDPLCS---IQYIKSCQRYEGGFSLLPYGEAHAGATFCALASWSLILKM 212



 Score = 28.3 bits (60), Expect = 0.97
 Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
 Frame = +1

Query: 340 SIGHDPHILYTLSAVQ-VLAMYDRLDAVDIEGIVRYIVSLQQEDGSFYG---DKWGEIDT 507
           S   +P +  T+ ++  +L + D L  +D + I  ++   +   G F         + D 
Sbjct: 90  SFEQEPQLAGTVFSICCLLFLGDNLSRIDRDLIKNFVELCKTSQGHFRSIAVPSCSDQDM 149

Query: 508 RFSFCAVMCLSLLQRLDAIDINKTVEFVLSCMNFDGGF 621
           R  + A    SLL      D   +++++ SC  ++GGF
Sbjct: 150 RQLYMATTIASLLD-FSLSDPLCSIQYIKSCQRYEGGF 186


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 34.7 bits (76), Expect = 0.011
 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 7/106 (6%)
 Frame = +1

Query: 325 GGISASIGHDPHILYTLSAVQVLAMYD---RLDAVD--IEGIVRYIVSLQQEDGSFYGDK 489
           G I     +       + A++    YD   R D ++  IE  + Y+V +Q+ DGS+YG  
Sbjct: 517 GNIMVEYSYPECTTSVILALRAFTKYDPGYRRDEIENTIENALEYVVKMQRPDGSWYG-S 575

Query: 490 WGEIDTRFSFCAVMCLSLLQRL--DAIDINKTVEFVLSCMNFDGGF 621
           W    T  +  A   L+   R   +     K  EF+LS    DGG+
Sbjct: 576 WAICFTYAAMFATGSLASAGRYYENCPVQKKACEFLLSKQRPDGGW 621


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = +1

Query: 142 HSDYLASYGLNKDDYEYCMTEYLRMSGIYWSLTAMELMGQSSRMPKE-DIIEFITQCQ 312
           HS+Y A +GL+   Y   M  Y+  SG  W   A          P   +   F+TQ Q
Sbjct: 229 HSNYYAGFGLSYYLYLSSMKAYINSSGCLWYEDATSFWDIVKHRPSSPEEKPFLTQFQ 286


>SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 248

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +1

Query: 91  KDVVLKEDRPKTLLLQKHSDYLASYGLNKDDYEYCMTEYLRMSGIYW 231
           KDV+  E R K+ LL  +S+ ++ Y    D Y   +T     SGIY+
Sbjct: 29  KDVLNYESRQKSDLLIPNSNSISIYNQIADKYSRKITREEIFSGIYF 75


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 413 SNLSYIASTCTALNVYSMCGSC 348
           + LSYIAS   + +V+S+C +C
Sbjct: 88  TRLSYIASEILSSDVWSICEAC 109


>SPBC14C8.04 |||acetolactate synthase regulatory
           unit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 289

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +1

Query: 130 LLQKHSDYLASYGLNKDDYEYCMTEYLRMSGIYWSLTAMELMGQSSRMPKEDII 291
           +L + S  LA+ G N D    C TE   +S +   L   + + + ++   EDI+
Sbjct: 83  VLSRLSGILAARGFNIDSLVVCATEVENLSRMTIVLRGADEVVEQAKRQIEDIV 136


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = -2

Query: 232  SSKYRTFLDIRSYNTRSHLYLSRNWLN----SRSAFVR-VKF*VDLLLRQHL 92
            S K+  FL +   N + H++L   WLN    S    +R V+F  DL  +Q L
Sbjct: 1020 SQKFHGFLILHD-NLKDHIHLEELWLNLLFLSLGLGIRSVQFRTDLTYKQKL 1070


>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 305 NAKIVKVEVSRLASDMIHTYYTH*VLYRYWLCMI 406
           N  I K ++ RLA  MIH  +T  V    W+ +I
Sbjct: 317 NCPIDKADLPRLALLMIHAVFTSPVSLAQWVELI 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,574,536
Number of Sequences: 5004
Number of extensions: 50535
Number of successful extensions: 162
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)