Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28i21
(632 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1226 + 25394106-25394168,25394243-25394396,25394548-253946... 192 3e-49
01_01_0336 + 2712412-2712576,2713663-2713738,2713840-2713898,271... 62 5e-10
01_06_0638 - 30768546-30768779,30768908-30769017,30769301-307694... 50 6e-10
11_01_0569 + 4515722-4515733,4517579-4517701,4517812-4517934,452... 31 0.58
11_03_0112 - 10135052-10135168,10135712-10135795,10135879-101359... 29 2.3
02_01_0317 - 2128660-2128776,2129281-2129364,2129463-2129543,213... 29 2.3
11_07_0018 - 27458523-27458541,27458722-27458864 29 3.1
09_02_0263 + 6416010-6416152,6416333-6416351 29 3.1
04_03_0073 - 10702352-10702619,10702702-10702836,10702915-10703594 28 7.1
04_04_0539 + 26088245-26088556,26088806-26088931,26089300-260896... 27 9.4
>08_02_1226 +
25394106-25394168,25394243-25394396,25394548-25394664,
25395541-25395607,25395701-25395828,25396327-25396460,
25396552-25396650,25396780-25396902
Length = 294
Score = 192 bits (467), Expect = 3e-49
Identities = 80/167 (47%), Positives = 118/167 (70%)
Frame = +1
Query: 127 LLLQKHSDYLASYGLNKDDYEYCMTEYLRMSGIYWSLTAMELMGQSSRMPKEDIIEFITQ 306
L +KH Y+ + KD +E + E++R++G YW LT ++L+ + + +++IE+I
Sbjct: 7 LAAEKHVRYIVTVEKRKDSFESLVMEHIRLNGAYWGLTTLDLLHKLRAVEADEVIEWIMS 66
Query: 307 CQDSESGGISASIGHDPHILYTLSAVQVLAMYDRLDAVDIEGIVRYIVSLQQEDGSFYGD 486
C ESGG ++GHD H+LYTLSAVQVL ++DRLDA+D++ + YI LQ EDGSF GD
Sbjct: 67 CYHPESGGFGGNVGHDAHVLYTLSAVQVLCLFDRLDALDVDKVADYIAGLQNEDGSFSGD 126
Query: 487 KWGEIDTRFSFCAVMCLSLLQRLDAIDINKTVEFVLSCMNFDGGFGS 627
WGE+DTRFS+ A+ LSLL RL+ I++ K V++++SC N DGGFG+
Sbjct: 127 IWGEVDTRFSYIAICTLSLLHRLEKINVQKAVDYIVSCKNLDGGFGA 173
Score = 34.7 bits (76), Expect = 0.062
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = +1
Query: 226 YWSLTAMELMGQSSRMPKEDIIEFITQCQDSESGGIS 336
+W L+++ ++ + + K+ + +FI CQD E+GGIS
Sbjct: 226 WWVLSSLIMIDRVHWIDKDKLAKFILNCQDKENGGIS 262
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/92 (18%), Positives = 45/92 (48%)
Frame = +1
Query: 214 MSGIYWSLTAMELMGQSSRMPKEDIIEFITQCQDSESGGISASIGHDPHILYTLSAVQVL 393
M G++ + A+ + G + ++ + ++ + Q E GG++ + Y+ + L
Sbjct: 174 MPGVFCCVGALAITGSLHHIDRDLLGWWLCERQCKE-GGLNGRPEKLADVCYSWWVLSSL 232
Query: 394 AMYDRLDAVDIEGIVRYIVSLQQEDGSFYGDK 489
M DR+ +D + + ++I++ Q ++ D+
Sbjct: 233 IMIDRVHWIDKDKLAKFILNCQDKENGGISDR 264
>01_01_0336 +
2712412-2712576,2713663-2713738,2713840-2713898,
2714009-2714148,2714690-2714745,2714832-2714908,
2715007-2715075
Length = 213
Score = 61.7 bits (143), Expect = 5e-10
Identities = 35/92 (38%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Frame = +1
Query: 358 HILYTLSAVQVLAM--YDRLDAVDIEGIVRYIVSLQQEDGSFYGDKWG-EIDTRFSFCAV 528
H+ T SA+ +L + YD L +D + ++ + +LQQ DGSF G E D RF +CA
Sbjct: 108 HLASTYSALAILKIVGYD-LANIDNKVLLSSMRNLQQPDGSFMPTHIGAETDLRFVYCAA 166
Query: 529 MCLSLLQRLDAIDINKTVEFVLSCMNFDGGFG 624
S+L+ +D K +++LSC ++DGGFG
Sbjct: 167 AICSMLKDWTGMDKEKAKQYILSCQSYDGGFG 198
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/89 (19%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Frame = +1
Query: 214 MSGIYWSLTAMELMGQS-SRMPKEDIIEFITQCQDSESGGISASIGHDPHILYTLSAVQV 390
++ Y +L ++++G + + + ++ + Q + + IG + + + A +
Sbjct: 109 LASTYSALAILKIVGYDLANIDNKVLLSSMRNLQQPDGSFMPTHIGAETDLRFVYCAAAI 168
Query: 391 LAMYDRLDAVDIEGIVRYIVSLQQEDGSF 477
+M +D E +YI+S Q DG F
Sbjct: 169 CSMLKDWTGMDKEKAKQYILSCQSYDGGF 197
>01_06_0638 -
30768546-30768779,30768908-30769017,30769301-30769490,
30769842-30769914,30770007-30770063,30770147-30770211,
30770278-30770488,30770568-30770650,30771123-30771158,
30771611-30771713,30771813-30771899,30772210-30772403
Length = 480
Score = 49.6 bits (113), Expect(2) = 6e-10
Identities = 29/117 (24%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Frame = +1
Query: 136 QKHSDYLASYGLNKDDYEYCMTEYLRMSGIYWSLTAMELMGQSSRMPKEDIIEFITQCQD 315
++H +YL GL + + + R YW + A+ L+ + ++DI++F+++CQD
Sbjct: 71 EQHVEYLTR-GLKHLGPSFHVLDANRPWLCYWIIHALALLDEIPDDVEDDIVDFLSRCQD 129
Query: 316 SESGGISASIGHDPHILYTLSAVQVLAMYD---RLDAVDIEGIVRYIVSLQQEDGSF 477
+ GG G PH+ T +AV L L +V+ + + ++++ ++ G+F
Sbjct: 130 KD-GGYGGGPGQLPHLATTYAAVNTLVTIGSERALSSVNRDNLYKFMLRMKDTSGAF 185
Score = 31.5 bits (68), Expect(2) = 6e-10
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 493 GEIDTRFSFCAVMCLSLLQRLDAIDINKTVEFVLSCMNFDGGFGSK 630
GEID R S+ A+ SL+ LD ++ C ++GG +
Sbjct: 226 GEIDVRASYTAISVASLVNILDGELAKGVGNYITRCQTYEGGIAGE 271
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +1
Query: 295 FITQCQDSESGGISASIGHDPHILYTLSAVQVLAMYDRLDAVDIEGIV 438
+IT+CQ E GGI+ + H YT + + + + +D +D+ ++
Sbjct: 257 YITRCQTYE-GGIAGEPYAEAHGGYTFCGLATMILLNEVDKLDLASLI 303
>11_01_0569 +
4515722-4515733,4517579-4517701,4517812-4517934,
4520422-4520520,4520649-4520705,4521421-4521533,
4521633-4521810,4523684-4523764,4523837-4523920,
4525429-4525437
Length = 292
Score = 31.5 bits (68), Expect = 0.58
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +1
Query: 442 YIVSLQQEDGSFYGDKWGEIDTRFSFCAVMCLSLLQRL--DAIDINKTVEFVLSCMNFDG 615
+I S Q+ DGS+YG WG T ++ AV L R ++ + K +F+LS G
Sbjct: 165 FIESSQRSDGSWYG-SWGICFTYATWFAVTGLVSAGRTLGNSATVRKACDFLLSKQLPSG 223
Query: 616 GFG 624
G+G
Sbjct: 224 GWG 226
>11_03_0112 -
10135052-10135168,10135712-10135795,10135879-10135953,
10137801-10137978,10138048-10138212,10138291-10138337,
10140233-10140301,10140531-10140629,10141256-10141375,
10141459-10141581,10149251-10149364,10150725-10150913,
10151058-10151110,10151365-10151470,10151957-10152085
Length = 555
Score = 29.5 bits (63), Expect = 2.3
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 16/106 (15%)
Frame = +1
Query: 355 PHILYTLSAVQVLAMYDRL----DAVDIEGIVR----YIVSLQQEDGSFYG------DKW 492
PH+ T SA+Q L + L V+IE ++ +I + QQ DGS+Y W
Sbjct: 350 PHVECTSSAIQGLISFTELYPGYRGVEIESCIKNAVMFIENKQQNDGSWYAKFNARYGTW 409
Query: 493 GEIDTRFSFCAVMCLSLLQR--LDAIDINKTVEFVLSCMNFDGGFG 624
G T +F A+ L R ++ I +F+LS GG+G
Sbjct: 410 GICFTYGAFFAIRGLIAAGRNYENSQAIRNGCKFLLSKQLSAGGWG 455
>02_01_0317 -
2128660-2128776,2129281-2129364,2129463-2129543,
2130230-2130407,2130530-2130673,2130780-2130826,
2131149-2131205,2131989-2132087,2132301-2132423,
2132514-2132636,2132859-2132972,2133612-2133800,
2134408-2134574,2134707-2134791,2134891-2135085,
2135162-2135251,2135418-2135603,2135885-2135959,
2136757-2136957
Length = 784
Score = 29.5 bits (63), Expect = 2.3
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Frame = +1
Query: 355 PHILYTLSAVQVLAMYDRL------DAVD--IEGIVRYIVSLQQEDGSFYGDKWGEIDTR 510
P++ T +A+Q L + +L +D I +I +Q+ DGS+YG W T
Sbjct: 584 PYVECTSAAIQALTAFKKLYPGHRKSEIDNCISKAASFIEGIQKSDGSWYG-SWAVCFTY 642
Query: 511 FSFCAVMCLSLLQRL--DAIDINKTVEFVLSCMNFDGGFG 624
++ V L R ++ I K +F+LS GG+G
Sbjct: 643 GTWFGVKGLVAAGRTFKNSPAIRKACDFLLSKELPSGGWG 682
>11_07_0018 - 27458523-27458541,27458722-27458864
Length = 53
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 415 AVDIEGIVRYIVSLQQEDGSFYGDKWGEIDTRFS 516
A+ + +V Y+ + Q+ G DKW E+D R S
Sbjct: 3 AMSADNLVIYVATTQRGGGQQEWDKWNELDMRTS 36
>09_02_0263 + 6416010-6416152,6416333-6416351
Length = 53
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 415 AVDIEGIVRYIVSLQQEDGSFYGDKWGEIDTRFS 516
A+ + +V Y+ + Q+ G DKW E+D R S
Sbjct: 3 AMSADNLVIYVATTQRGGGQQEWDKWNELDMRTS 36
>04_03_0073 - 10702352-10702619,10702702-10702836,10702915-10703594
Length = 360
Score = 27.9 bits (59), Expect = 7.1
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +2
Query: 530 CVYHSYNDWMPSTSTRLWSLC 592
C Y+ Y W+P T WS C
Sbjct: 267 CAYNQYAHWIPLVITPKWSRC 287
>04_04_0539 +
26088245-26088556,26088806-26088931,26089300-26089614,
26090635-26090763,26091172-26091570
Length = 426
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/75 (25%), Positives = 38/75 (50%)
Frame = +1
Query: 250 LMGQSSRMPKEDIIEFITQCQDSESGGISASIGHDPHILYTLSAVQVLAMYDRLDAVDIE 429
L +P ++++E+ + S+ G+ + GHD H L A ++L+ +R + I+
Sbjct: 94 LRADMDALPVQELVEWEHK---SKVDGVMHACGHDVHTAMLLGAAKLLS--ERKE--QIK 146
Query: 430 GIVRYIVSLQQEDGS 474
G VR + +E G+
Sbjct: 147 GTVRLLFQPAEEGGA 161
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,846,535
Number of Sequences: 37544
Number of extensions: 295066
Number of successful extensions: 786
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -