Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28i21
(632 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10438-12|ABB88244.1| 325|Caenorhabditis elegans Hypothetical p... 177 5e-45
U10438-11|AAL50321.1| 335|Caenorhabditis elegans Hypothetical p... 177 5e-45
Z77659-6|CAB01167.1| 401|Caenorhabditis elegans Hypothetical pr... 80 1e-15
Z93393-4|CAB07699.1| 360|Caenorhabditis elegans Hypothetical pr... 54 1e-07
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p... 28 4.8
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr... 28 4.8
U23518-8|AAO38654.1| 400|Caenorhabditis elegans Nuclear hormone... 28 4.8
U23518-7|AAO38655.1| 440|Caenorhabditis elegans Nuclear hormone... 28 4.8
U23518-6|AAD31548.2| 446|Caenorhabditis elegans Nuclear hormone... 28 4.8
U23518-5|AAO38653.1| 448|Caenorhabditis elegans Nuclear hormone... 28 4.8
U23518-4|ABB88231.1| 450|Caenorhabditis elegans Nuclear hormone... 28 4.8
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein. 28 4.8
AF083234-1|AAD03692.1| 400|Caenorhabditis elegans nuclear recep... 28 4.8
AF083233-1|AAD03691.1| 458|Caenorhabditis elegans nuclear recep... 28 4.8
>U10438-12|ABB88244.1| 325|Caenorhabditis elegans Hypothetical
protein B0280.1b protein.
Length = 325
Score = 177 bits (431), Expect = 5e-45
Identities = 79/185 (42%), Positives = 120/185 (64%)
Frame = +1
Query: 76 MSFTTKDVVLKEDRPKTLLLQKHSDYLASYGLNKDDYEYCMTEYLRMSGIYWSLTAMELM 255
+ F KDV L ++ P LL H++++ Y NK+ Y Y M E+LR+SGIYW + AM+L
Sbjct: 7 LDFARKDVDLPQNSPNELLKDLHANFINQYEKNKNSYHYIMAEHLRVSGIYWCVNAMDLS 66
Query: 256 GQSSRMPKEDIIEFITQCQDSESGGISASIGHDPHILYTLSAVQVLAMYDRLDAVDIEGI 435
Q RM E+I+ ++ C++++ GG + GHD H+L+TL AVQ L +++ ++ D + I
Sbjct: 67 KQLERMSTEEIVNYVLGCRNTD-GGYGPAPGHDSHLLHTLCAVQTLIIFNSIEKADADTI 125
Query: 436 VRYIVSLQQEDGSFYGDKWGEIDTRFSFCAVMCLSLLQRLDAIDINKTVEFVLSCMNFDG 615
Y+ LQQEDGSF GD GE+DTRF+ C++ LL RL ++I+ V F++ C N DG
Sbjct: 126 SEYVKGLQQEDGSFCGDLSGEVDTRFTLCSLATCHLLGRLSTLNIDSAVRFLMRCYNTDG 185
Query: 616 GFGSK 630
GFG++
Sbjct: 186 GFGTR 190
Score = 58.0 bits (134), Expect = 5e-09
Identities = 40/167 (23%), Positives = 79/167 (47%), Gaps = 5/167 (2%)
Frame = +1
Query: 145 SDYLASY--GLNKDDYEYC--MTEYLRMSGIYWSLTAMELMGQSSRMPKEDIIEFITQCQ 312
+D ++ Y GL ++D +C ++ + SL L+G+ S + + + F+ +C
Sbjct: 122 ADTISEYVKGLQQEDGSFCGDLSGEVDTRFTLCSLATCHLLGRLSTLNIDSAVRFLMRCY 181
Query: 313 DSESGGISASIGHDPHILYTLSAVQVLAMYDRLDAVDIEGIVRYIVSLQQEDGSFYGDKW 492
+++ GG G + H V LA+ RLD +D + ++ Q + G G
Sbjct: 182 NTD-GGFGTRPGSESHSGQIYCCVGALAIAGRLDEIDRDRTAEWLAFRQCDSGGLNGRPE 240
Query: 493 GEIDTRFSFCAVMCLSLLQRLDAIDINKTVEFVLSCMNFD-GGFGSK 630
D +S+ + L++L RL+ ID + +F+ +C + + GGF +
Sbjct: 241 KLPDVCYSWWVLASLAILGRLNFIDSDAMKKFIYACQDDETGGFADR 287
>U10438-11|AAL50321.1| 335|Caenorhabditis elegans Hypothetical
protein B0280.1a protein.
Length = 335
Score = 177 bits (431), Expect = 5e-45
Identities = 79/185 (42%), Positives = 120/185 (64%)
Frame = +1
Query: 76 MSFTTKDVVLKEDRPKTLLLQKHSDYLASYGLNKDDYEYCMTEYLRMSGIYWSLTAMELM 255
+ F KDV L ++ P LL H++++ Y NK+ Y Y M E+LR+SGIYW + AM+L
Sbjct: 7 LDFARKDVDLPQNSPNELLKDLHANFINQYEKNKNSYHYIMAEHLRVSGIYWCVNAMDLS 66
Query: 256 GQSSRMPKEDIIEFITQCQDSESGGISASIGHDPHILYTLSAVQVLAMYDRLDAVDIEGI 435
Q RM E+I+ ++ C++++ GG + GHD H+L+TL AVQ L +++ ++ D + I
Sbjct: 67 KQLERMSTEEIVNYVLGCRNTD-GGYGPAPGHDSHLLHTLCAVQTLIIFNSIEKADADTI 125
Query: 436 VRYIVSLQQEDGSFYGDKWGEIDTRFSFCAVMCLSLLQRLDAIDINKTVEFVLSCMNFDG 615
Y+ LQQEDGSF GD GE+DTRF+ C++ LL RL ++I+ V F++ C N DG
Sbjct: 126 SEYVKGLQQEDGSFCGDLSGEVDTRFTLCSLATCHLLGRLSTLNIDSAVRFLMRCYNTDG 185
Query: 616 GFGSK 630
GFG++
Sbjct: 186 GFGTR 190
Score = 58.0 bits (134), Expect = 5e-09
Identities = 40/167 (23%), Positives = 79/167 (47%), Gaps = 5/167 (2%)
Frame = +1
Query: 145 SDYLASY--GLNKDDYEYC--MTEYLRMSGIYWSLTAMELMGQSSRMPKEDIIEFITQCQ 312
+D ++ Y GL ++D +C ++ + SL L+G+ S + + + F+ +C
Sbjct: 122 ADTISEYVKGLQQEDGSFCGDLSGEVDTRFTLCSLATCHLLGRLSTLNIDSAVRFLMRCY 181
Query: 313 DSESGGISASIGHDPHILYTLSAVQVLAMYDRLDAVDIEGIVRYIVSLQQEDGSFYGDKW 492
+++ GG G + H V LA+ RLD +D + ++ Q + G G
Sbjct: 182 NTD-GGFGTRPGSESHSGQIYCCVGALAIAGRLDEIDRDRTAEWLAFRQCDSGGLNGRPE 240
Query: 493 GEIDTRFSFCAVMCLSLLQRLDAIDINKTVEFVLSCMNFD-GGFGSK 630
D +S+ + L++L RL+ ID + +F+ +C + + GGF +
Sbjct: 241 KLPDVCYSWWVLASLAILGRLNFIDSDAMKKFIYACQDDETGGFADR 287
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/68 (26%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Frame = +1
Query: 226 YWSLTAMELMGQSSRMPKEDIIEFITQCQDSESGGISASIGHDPHILYTLSAVQVLAMY- 402
+W L ++ ++G+ + + + + +FI CQD E+GG + G +T+ + L+++
Sbjct: 249 WWVLASLAILGRLNFIDSDAMKKFIYACQDDETGGFADRPGDCADPFHTVFGIAALSLFG 308
Query: 403 -DRLDAVD 423
D L++VD
Sbjct: 309 DDTLESVD 316
>Z77659-6|CAB01167.1| 401|Caenorhabditis elegans Hypothetical
protein F23B12.6 protein.
Length = 401
Score = 80.2 bits (189), Expect = 1e-15
Identities = 57/189 (30%), Positives = 92/189 (48%), Gaps = 7/189 (3%)
Frame = +1
Query: 85 TTKDVVLKEDRPKTLLLQKHSDYLASYGLNKDDYEYCMTEYLRMSGIYWSLTAMELMGQS 264
TT D L E T+ QKH+ YL Y L Y + R YW + A++++
Sbjct: 50 TTSDEDLAE---LTIFRQKHASYLLRY-LKNCPSSYATLDASRSWMCYWGVNALKIL--D 103
Query: 265 SRMPK---EDIIEFITQCQDSESGGISASIGHDPHILYTLSAVQVLAMYDRLDA---VDI 426
+ +P E+II F+ C+ E GG G H+ T +AV L + +A ++
Sbjct: 104 AEIPNDVIENIIVFLKSCEHPE-GGYGGGPGQLAHLAPTYAAVMCLVSLQKEEALRSINR 162
Query: 427 EGIVRYIVSLQQEDGSFYGDKWGEIDTRFSFCAV-MCLSLLQRLDAIDINKTVEFVLSCM 603
+ ++ + E G FY + GEID R ++CA+ C + +D I N E+++SC
Sbjct: 163 VTLFNFLKKCKHESGGFYMHEGGEIDMRSAYCALATCEIVGLPMDEIS-NGVAEWIISCQ 221
Query: 604 NFDGGFGSK 630
+F+GGFG +
Sbjct: 222 SFEGGFGGE 230
Score = 45.6 bits (103), Expect = 3e-05
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 2/114 (1%)
Frame = +1
Query: 286 IIEFITQCQDSESGGISASIGHDPHILYTLSAVQVLAMYDR-LDAVDIEGIVRYIVSLQQ 462
+ F+ +C+ ESGG G + + A+ + +D + G+ +I+S Q
Sbjct: 165 LFNFLKKCKH-ESGGFYMHEGGEIDMRSAYCALATCEIVGLPMDEIS-NGVAEWIISCQS 222
Query: 463 EDGSFYGDKWGEIDTRFSFCAVMCLSLLQRLDAIDINKTVEFVL-SCMNFDGGF 621
+G F G+ + E ++FCAV L LL R D+ + + M F+GGF
Sbjct: 223 FEGGFGGEPYTEAHGGYTFCAVASLVLLNRFRLADMEGLLRWATRRQMRFEGGF 276
>Z93393-4|CAB07699.1| 360|Caenorhabditis elegans Hypothetical
protein Y48E1B.3 protein.
Length = 360
Score = 53.6 bits (123), Expect = 1e-07
Identities = 51/187 (27%), Positives = 90/187 (48%), Gaps = 16/187 (8%)
Frame = +1
Query: 112 DRPKTLLLQKHSDYLASYGLNKDDYEYCMTEYLRMSGIYWSLTAMELMGQSSRM----PK 279
D+ +T +KH +L + LN Y E R + +++++++L+G+ + +
Sbjct: 22 DQTQTFEFKKHIGFLIRH-LNVFPQPYNTLETSRNTIFLFAISSLDLLGELDNLLTPERR 80
Query: 280 EDIIEFITQCQDSESG--GISAS-----IGHDP-HILYTLSAVQVLAMY-DRLDAVDIEG 432
+ I++I Q + G S G+D ++ T SA+ LA+ D L VD +
Sbjct: 81 QAYIDWIYGLQFTNGNVCGFRGSHSCENSGYDEANLAQTYSALLSLAILGDDLKKVDRKA 140
Query: 433 IVRYIVSLQQEDGSFYGDKWG-EIDTRFSFCAVMCLSLLQ--RLDAIDINKTVEFVLSCM 603
I++ + + Q+++G F+ G E D RF FCAV +L + ID K F+ +
Sbjct: 141 ILKTVKTAQRDNGCFWSQGVGSESDMRFVFCAVAISHILDGDKEQTIDWTKLAGFLRQSL 200
Query: 604 NFDGGFG 624
N DGG G
Sbjct: 201 NIDGGIG 207
Score = 34.3 bits (75), Expect = 0.074
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Frame = +1
Query: 325 GGISASIGHDPHILYTLSAVQVLAMYDRL--DAV----DIEGIVRYIVSLQQEDGSFYGD 486
GGI + G + H T A+ LA+ +RL + V DI+ ++R+ ++Q++D F+G
Sbjct: 204 GGIGQAPGDESHGGSTFCAIASLALSNRLWTEEVLTRRDIDRLIRW--AIQKQDIGFHGR 261
Query: 487 KWGEIDTRFSFCAVMCLSLLQRLDAIDINKTVEFVLSCMN-FDGGF 621
D+ ++F L +L + EF++ C + GGF
Sbjct: 262 AHKPDDSCYAFWIGATLKILNAYHLVSKQHLREFLMICQHPHIGGF 307
>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
protein C47D12.1c protein.
Length = 4053
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 614 PSKFMQLSTNSTVLLMSMASNRCKSDRHITAQKENLV 504
P+ Q+ S LL S+A + CK D H T Q +L+
Sbjct: 420 PNNSSQVQIMSARLLNSLAESLCKMDSHDTFQTRDLL 456
>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical
protein C47D12.1b protein.
Length = 4061
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 614 PSKFMQLSTNSTVLLMSMASNRCKSDRHITAQKENLV 504
P+ Q+ S LL S+A + CK D H T Q +L+
Sbjct: 420 PNNSSQVQIMSARLLNSLAESLCKMDSHDTFQTRDLL 456
>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical
protein C47D12.1a protein.
Length = 4064
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 614 PSKFMQLSTNSTVLLMSMASNRCKSDRHITAQKENLV 504
P+ Q+ S LL S+A + CK D H T Q +L+
Sbjct: 420 PNNSSQVQIMSARLLNSLAESLCKMDSHDTFQTRDLL 456
>U23518-8|AAO38654.1| 400|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform b protein.
Length = 400
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/39 (35%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = -1
Query: 437 TIPSISTASNLSYIASTCTALN-VYSMCGSCPMLAEIPP 324
T+P +S+ S++ ++S+C++++ VYS C LA +PP
Sbjct: 100 TLPFVSSGSSICSVSSSCSSVSTVYSNC-----LAMLPP 133
>U23518-7|AAO38655.1| 440|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform c protein.
Length = 440
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/39 (35%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = -1
Query: 437 TIPSISTASNLSYIASTCTALN-VYSMCGSCPMLAEIPP 324
T+P +S+ S++ ++S+C++++ VYS C LA +PP
Sbjct: 140 TLPFVSSGSSICSVSSSCSSVSTVYSNC-----LAMLPP 173
>U23518-6|AAD31548.2| 446|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform d protein.
Length = 446
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/39 (35%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = -1
Query: 437 TIPSISTASNLSYIASTCTALN-VYSMCGSCPMLAEIPP 324
T+P +S+ S++ ++S+C++++ VYS C LA +PP
Sbjct: 146 TLPFVSSGSSICSVSSSCSSVSTVYSNC-----LAMLPP 179
>U23518-5|AAO38653.1| 448|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform a protein.
Length = 448
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/39 (35%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = -1
Query: 437 TIPSISTASNLSYIASTCTALN-VYSMCGSCPMLAEIPP 324
T+P +S+ S++ ++S+C++++ VYS C LA +PP
Sbjct: 146 TLPFVSSGSSICSVSSSCSSVSTVYSNC-----LAMLPP 179
>U23518-4|ABB88231.1| 450|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform e protein.
Length = 450
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/39 (35%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = -1
Query: 437 TIPSISTASNLSYIASTCTALN-VYSMCGSCPMLAEIPP 324
T+P +S+ S++ ++S+C++++ VYS C LA +PP
Sbjct: 148 TLPFVSSGSSICSVSSSCSSVSTVYSNC-----LAMLPP 181
>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
Length = 4064
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 614 PSKFMQLSTNSTVLLMSMASNRCKSDRHITAQKENLV 504
P+ Q+ S LL S+A + CK D H T Q +L+
Sbjct: 420 PNNSSQVQIMSARLLNSLAESLCKMDSHDTFQTRDLL 456
>AF083234-1|AAD03692.1| 400|Caenorhabditis elegans nuclear receptor
NHR-21b protein.
Length = 400
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/39 (35%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = -1
Query: 437 TIPSISTASNLSYIASTCTALN-VYSMCGSCPMLAEIPP 324
T+P +S+ S++ ++S+C++++ VYS C LA +PP
Sbjct: 100 TLPFVSSGSSICSVSSSCSSVSTVYSNC-----LAMLPP 133
>AF083233-1|AAD03691.1| 458|Caenorhabditis elegans nuclear receptor
NHR-21a protein.
Length = 458
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/39 (35%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = -1
Query: 437 TIPSISTASNLSYIASTCTALN-VYSMCGSCPMLAEIPP 324
T+P +S+ S++ ++S+C++++ VYS C LA +PP
Sbjct: 158 TLPFVSSGSSICSVSSSCSSVSTVYSNC-----LAMLPP 191
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,181,354
Number of Sequences: 27780
Number of extensions: 277914
Number of successful extensions: 740
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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