Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28i21
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    25   0.61 
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    25   0.61 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.9  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   9.9  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 335 EIPPLSLSWHCVMNSIISSLGIL 267
           + PPL+  WH ++  +I  LG +
Sbjct: 43  QYPPLNPMWHGILGFVIGMLGFV 65


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 335 EIPPLSLSWHCVMNSIISSLGIL 267
           + PPL+  WH ++  +I  LG +
Sbjct: 9   QYPPLNPMWHGILGFVIGMLGFV 31


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 118  PKTLLLQKHSDYLASYGLNKDDYE 189
            PK  L +K   ++ASY L  +  E
Sbjct: 1612 PKNCLFRKPEHFVASYALISNQCE 1635


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 350 CPMLAEIPPLSLSW 309
           C + A  PPL++SW
Sbjct: 632 CGVAAGDPPLTISW 645


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 531 HYRTEREPSVYFT 493
           HYR++R   VY+T
Sbjct: 132 HYRSKRRGFVYYT 144


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,920
Number of Sequences: 438
Number of extensions: 3447
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)