Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28i19
(351 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 25 2.6
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc... 25 2.6
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 25 2.6
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 25 3.4
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 25 4.5
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce... 25 4.5
SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase Cdc2|Sch... 25 4.5
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d... 25 4.5
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 24 6.0
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p... 24 6.0
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 24 7.9
>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1106
Score = 25.4 bits (53), Expect = 2.6
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -1
Query: 291 DPLYLSPQTILLDKIGVIQLFMRSKMHNAAELQNWFYEH 175
D L ++ L+DK+G ++ N A+L NW H
Sbjct: 680 DLLIVNKSQPLVDKLGKPEILFMGPDENTADLVNWATIH 718
>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 372
Score = 25.4 bits (53), Expect = 2.6
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +2
Query: 59 YSSVVAA*KWPSTGAELNFTVAWASWSRLNADAVHWGNTCS*NQFC 196
Y VV + +W ++ +A ++W+RL+ + V +G S Q C
Sbjct: 122 YFGVVNSSEW-DIPKWIDMDIAHSNWNRLSREGVLYGGMKSYRQMC 166
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 25.4 bits (53), Expect = 2.6
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = -1
Query: 342 YEQACINISKE---NRVKHGDPLYLSPQTILLDKIGVIQLFMRSK 217
Y +A + I+K N+V+H LYL Q IL D + + + K
Sbjct: 224 YTKAILAIAKHHCWNKVEHSALLYLEHQLILYDTLTFVVHLLSQK 268
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 25.0 bits (52), Expect = 3.4
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +2
Query: 176 CS*NQFCSSAALCILERMNSCITPILSSNIVWG 274
C N FC ++ + C PI+ +N+V G
Sbjct: 952 CLSNNFCMEHLPLLITILEKCDNPIIRNNLVIG 984
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 24.6 bits (51), Expect = 4.5
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 107 IPLPSRAISMRPRRCCTPK 51
+PLPSR+ SM PR K
Sbjct: 354 VPLPSRSHSMNPRELVAAK 372
>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 610
Score = 24.6 bits (51), Expect = 4.5
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -3
Query: 217 DAQRGGAAKLVLRTRVAPVHRVGVEPAPRRPSDGKV*FRSRRG 89
D AAKLVLR R+A + V+ P +G R +G
Sbjct: 248 DLSLATAAKLVLRRRIAGTLKDEVDLQKALPKEGSQYLREVKG 290
>SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase
Cdc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 24.6 bits (51), Expect = 4.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 327 INISKENRVKHGDPLYLSPQTILLDKIGVIQL 232
+N R+ H D L PQ +L+DK G ++L
Sbjct: 122 VNFCHSRRIIHRD---LKPQNLLIDKEGNLKL 150
>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 24.6 bits (51), Expect = 4.5
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -2
Query: 221 PRCTTRRSCKIGFTNTC 171
P C T + CK G TN C
Sbjct: 100 PECKTCKFCKSGKTNLC 116
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 24.2 bits (50), Expect = 6.0
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -1
Query: 201 ELQNWFYEHVLPQC 160
E+QNW++EH C
Sbjct: 190 EIQNWYFEHHTELC 203
>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 24.2 bits (50), Expect = 6.0
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 117 PSLGRLGAGSTPTRCTGATRVRKTNFAAPPRCASW 221
PSLG+ G GS + + + KT A+P W
Sbjct: 280 PSLGKNGEGSNESVIMRLSEIGKTETASPLLQYEW 314
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 23.8 bits (49), Expect = 7.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 262 ITRQNRRYTAVHALQDAQRG 203
+T N+ Y H LQDA +G
Sbjct: 389 LTGDNKYYAEGHGLQDAHKG 408
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,474,224
Number of Sequences: 5004
Number of extensions: 28946
Number of successful extensions: 69
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -