Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28i19
(351 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0183 - 21406474-21406636,21407412-21407956 31 0.19
04_03_0147 - 11853940-11854128,11854933-11855013,11855501-118555... 30 0.44
10_06_0161 + 11344712-11344877,11345870-11346084 28 1.8
05_01_0051 - 345125-345693,345833-346925 28 2.4
12_02_0617 + 21256745-21256943,21257454-21257647,21257836-212580... 27 3.1
02_01_0262 - 1734447-1735090,1735219-1735367,1735458-1735633,173... 27 3.1
09_06_0014 + 20232853-20233135,20233190-20233194 27 4.1
01_05_0129 + 18431820-18432224 27 4.1
01_01_1055 + 8342761-8342822,8343374-8343791,8343867-8344096,834... 27 4.1
11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733 27 5.5
04_03_0707 - 18886191-18886402,18886828-18887134,18887139-18887405 26 7.2
03_06_0468 + 34153425-34153823 26 7.2
01_07_0224 - 42121011-42122486 26 7.2
01_06_0313 - 28399636-28400151 26 7.2
01_03_0099 + 12547235-12547510 26 7.2
07_03_0117 + 13589997-13590998 26 9.6
06_03_0324 - 19591267-19592097,19592266-19592583,19592827-19593108 26 9.6
02_05_1137 - 34372803-34372869,34373088-34373229,34373334-343734... 26 9.6
>09_06_0183 - 21406474-21406636,21407412-21407956
Length = 235
Score = 31.5 bits (68), Expect = 0.19
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -3
Query: 256 RQNRRYTAVHALQDAQRGGAAKLVLRTRVAPVHRVGVEPAPRRPS 122
R+N R + A Q +RG + R+ +HRVG E P RPS
Sbjct: 60 RENERSSGKKAAQRERRGAYRRP--RSTTVGIHRVGAEATPPRPS 102
>04_03_0147 -
11853940-11854128,11854933-11855013,11855501-11855584,
11855663-11855735,11855888-11855949,11856246-11856327,
11857643-11858262
Length = 396
Score = 30.3 bits (65), Expect = 0.44
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = -3
Query: 238 TAVHALQDAQRGGAAKLVLRTRVAPVHRVGVEPAPRRPSDGKV*FRSRRG 89
TA L++ RGGA + R A +H G +P R +DG R R G
Sbjct: 89 TADRELEELARGGARERAERWAAAHLHGGGGDPRDRALADGNPDGRGRAG 138
>10_06_0161 + 11344712-11344877,11345870-11346084
Length = 126
Score = 28.3 bits (60), Expect = 1.8
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = +3
Query: 126 GRLGAGSTPTRCTGATRVRKTNFAAPPRCASWSA*TAV 239
GR GAGS RC G +R+ ++AA A W+A TAV
Sbjct: 6 GRAGAGSGDWRCAG--WLRRADWAASR--AGWAALTAV 39
>05_01_0051 - 345125-345693,345833-346925
Length = 553
Score = 27.9 bits (59), Expect = 2.4
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = -1
Query: 87 HFYAATTLLYAERNLF 40
HFYAA TLL RNLF
Sbjct: 179 HFYAAATLLPCARNLF 194
>12_02_0617 +
21256745-21256943,21257454-21257647,21257836-21258042,
21258115-21258232,21258325-21258401,21258513-21258692,
21259312-21259356,21260309-21260413,21261115-21261261
Length = 423
Score = 27.5 bits (58), Expect = 3.1
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = -1
Query: 327 INISKENRVKHGDPLYLSPQTILLDKIGVIQLFMRSKMHNAAELQNWFYEH 175
+ I++E+ VK DP P TI KIG +QL R H L+N Y++
Sbjct: 61 VKIAREDVVKEEDPTNNVPDTI-YSKIG-LQLHRRDN-HPLGILKNTIYDY 108
>02_01_0262 -
1734447-1735090,1735219-1735367,1735458-1735633,
1735719-1735853,1737039-1737120,1737307-1737461
Length = 446
Score = 27.5 bits (58), Expect = 3.1
Identities = 19/51 (37%), Positives = 21/51 (41%)
Frame = -3
Query: 241 YTAVHALQDAQRGGAAKLVLRTRVAPVHRVGVEPAPRRPSDGKV*FRSRRG 89
Y V +D G LV + R H VG PAP SD K R R G
Sbjct: 380 YHVVSGQKDLHVTGIRDLVRQKRT--FHEVGEHPAPIDKSDTKSWIRKRHG 428
>09_06_0014 + 20232853-20233135,20233190-20233194
Length = 95
Score = 27.1 bits (57), Expect = 4.1
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 178 TRVAPVHRVGVEPAPRRP 125
T++AP RVGV PAP +P
Sbjct: 36 TQLAPCARVGVAPAPGQP 53
>01_05_0129 + 18431820-18432224
Length = 134
Score = 27.1 bits (57), Expect = 4.1
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = -2
Query: 161 APRRR*ACSKTPKRR*SLIPLPSRAISMRPRRCCTPKGICSRSA 30
A RRR S +P PLPS ++ R PK C RSA
Sbjct: 2 AARRRQRPSSSPPLPPEHSPLPSVIVATARARTADPKIACDRSA 45
>01_01_1055 +
8342761-8342822,8343374-8343791,8343867-8344096,
8344136-8344324,8344458-8344555,8344588-8344742
Length = 383
Score = 27.1 bits (57), Expect = 4.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 78 HRNGPRRERN*TLPSLGRLGAGSTPTRCTGATRV 179
H + R + T+P L +G+ ST RCT RV
Sbjct: 12 HNDERRNGTSKTVPELSTVGSKSTVGRCTALQRV 45
>11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733
Length = 329
Score = 26.6 bits (56), Expect = 5.5
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 226 ALQDAQRGGAAKLVLRTRVAPVHRV 152
A D GGAA +V +T APV RV
Sbjct: 24 AAADFAMGGAAAVVAKTGAAPVERV 48
>04_03_0707 - 18886191-18886402,18886828-18887134,18887139-18887405
Length = 261
Score = 26.2 bits (55), Expect = 7.2
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 57 RTAASWPHRNGPRRERN*TLPSLGRLGAGSTPTRCTGA 170
+TAA+ P +GP R R+ L L AGS+ C GA
Sbjct: 194 KTAAAAPSPSGPLRPRSPPLEQLAG-KAGSSKNDCGGA 230
>03_06_0468 + 34153425-34153823
Length = 132
Score = 26.2 bits (55), Expect = 7.2
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 117 PSLGRLGAGSTP-TRCTGATRVRKTNFAAPPRCASWSA 227
P G +TP T G R+R + AAPP A+ +A
Sbjct: 81 PEHGHRACHTTPLTNVAGGARIRPSATAAPPSAAAVAA 118
>01_07_0224 - 42121011-42122486
Length = 491
Score = 26.2 bits (55), Expect = 7.2
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = -3
Query: 145 EPAPRRPSDGKV*FRSRRGPFLCGHDAAVRR 53
+PAPRRP G V SRRG + + AAV R
Sbjct: 308 QPAPRRPRLGIV---SRRGTRVIENQAAVAR 335
>01_06_0313 - 28399636-28400151
Length = 171
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 169 APVHRVGVEPAPRRPSDGK 113
A R PAPRRPSDG+
Sbjct: 115 ARTRRTQQRPAPRRPSDGE 133
>01_03_0099 + 12547235-12547510
Length = 91
Score = 26.2 bits (55), Expect = 7.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 230 SCAPRCTTRRSCKIGFTNTCCPSA 159
+C+ +R ++GF NT CP+A
Sbjct: 19 ACSLPAASRAQLQVGFYNTSCPTA 42
>07_03_0117 + 13589997-13590998
Length = 333
Score = 25.8 bits (54), Expect = 9.6
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -3
Query: 274 TPNNITRQNRRYTAVHAL-QDAQRGGAAKLVLRTRVAPVHRVGV 146
+P N++R + A ++ GG A +V +T VAP+ RV +
Sbjct: 24 SPANLSRTATAICSTPAFAREMVAGGVAGVVAKTAVAPLERVNL 67
>06_03_0324 - 19591267-19592097,19592266-19592583,19592827-19593108
Length = 476
Score = 25.8 bits (54), Expect = 9.6
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -3
Query: 217 DAQRGGAAKL-VLRTRVAPVHRVGVEPAPRRPSDGK 113
+A GG+A R VA RV V P+P R +GK
Sbjct: 372 EAATGGSASAPAARANVAEDERVEVVPSPIRQREGK 407
>02_05_1137 -
34372803-34372869,34373088-34373229,34373334-34373403,
34373521-34373823,34374215-34374280,34374425-34374490,
34374584-34374682,34376153-34376310,34376951-34377039,
34377209-34377591
Length = 480
Score = 25.8 bits (54), Expect = 9.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 135 GAGSTPTRCTGATRVRKTNFAAPP 206
G +TP + T TR ++ +AAPP
Sbjct: 152 GVVATPIKVTSLTRQQQDRYAAPP 175
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,307,646
Number of Sequences: 37544
Number of extensions: 228697
Number of successful extensions: 644
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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