Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28i19
(351 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46787-5|CAA86743.1| 409|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical pr... 28 1.6
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu... 28 2.2
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein. 28 2.2
AL110482-6|CAB60339.1| 179|Caenorhabditis elegans Hypothetical ... 28 2.2
Z82285-6|CAB05299.1| 252|Caenorhabditis elegans Hypothetical pr... 27 3.8
U56860-1|AAA98705.2| 194|Caenorhabditis elegans Hypothetical pr... 27 5.0
L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position... 27 5.0
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane... 27 5.0
AF077534-9|AAC26286.1| 194|Caenorhabditis elegans Hypothetical ... 26 8.7
AF016415-8|AAW88415.1| 297|Caenorhabditis elegans Serpentine re... 26 8.7
>Z46787-5|CAA86743.1| 409|Caenorhabditis elegans Hypothetical
protein C16C10.5 protein.
Length = 409
Score = 28.7 bits (61), Expect = 1.2
Identities = 19/53 (35%), Positives = 23/53 (43%)
Frame = -1
Query: 324 NISKENRVKHGDPLYLSPQTILLDKIGVIQLFMRSKMHNAAELQNWFYEHVLP 166
+I K G PLYL ++I KI I R H A LQN E + P
Sbjct: 41 SIFKIGHFPRGSPLYLLEKSITFSKIISIFSGHRMGQHGAIRLQNEVQEGMPP 93
>Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical
protein C56A3.1 protein.
Length = 393
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -2
Query: 236 SCSCAPRCTTRRSCKIGFTNTCCPSAP 156
SC CAP C SC + CP+ P
Sbjct: 45 SCGCAPACPQAPSCPVCPPPQPCPAPP 71
>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
guidance protein 2,isoform a protein.
Length = 2886
Score = 27.9 bits (59), Expect = 2.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 236 CITPILSSNIVWGDKYSGSPCLTRFS 313
C+ PIL + W +KY S CL+ S
Sbjct: 112 CLPPILKVLVEWYEKYDESLCLSMLS 137
>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
Length = 2914
Score = 27.9 bits (59), Expect = 2.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 236 CITPILSSNIVWGDKYSGSPCLTRFS 313
C+ PIL + W +KY S CL+ S
Sbjct: 112 CLPPILKVLVEWYEKYDESLCLSMLS 137
>AL110482-6|CAB60339.1| 179|Caenorhabditis elegans Hypothetical
protein Y39G8B.7 protein.
Length = 179
Score = 27.9 bits (59), Expect = 2.2
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 227 CAPRCTTRRSCKIGFTNTCCPSAPRRR*ACSKT 129
C+P C + K GF CC S R C+KT
Sbjct: 120 CSPNCASW--AKRGFCTNCCYSCQDRERYCAKT 150
>Z82285-6|CAB05299.1| 252|Caenorhabditis elegans Hypothetical
protein T28F3.6 protein.
Length = 252
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 246 GVIQLFMRSKMHNAAELQNWFYEHV 172
GVI L + + H ++LQ WFYE V
Sbjct: 139 GVI-LVVNPEEHKGSDLQQWFYEFV 162
>U56860-1|AAA98705.2| 194|Caenorhabditis elegans Hypothetical
protein M6.4 protein.
Length = 194
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Frame = -2
Query: 302 LNTAIRCICHPKQYY------STK*ALYSCSCAPRCTTRRSCKIG 186
L T+I C+C P Q Y S A Y C C + C +G
Sbjct: 111 LQTSIYCVCPPNQIYVKQKDTSKANAKYVCQEKAMCEPGQMCGVG 155
>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
protein 4 protein.
Length = 2104
Score = 26.6 bits (56), Expect = 5.0
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +2
Query: 167 GNTCS*NQFCSSAALCILERMNSCITPILSSNIVWG--DKYSGSPCLTRFSLLILI 328
GN + C+++ + CI LSSN+ D Y+G C T S L LI
Sbjct: 1807 GNPSQPGRICAASLCGLCNGHGDCIHDALSSNVTCACLDGYTGQFCETAPSNLPLI 1862
>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
matrix receptor MUP-4 protein.
Length = 2104
Score = 26.6 bits (56), Expect = 5.0
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +2
Query: 167 GNTCS*NQFCSSAALCILERMNSCITPILSSNIVWG--DKYSGSPCLTRFSLLILI 328
GN + C+++ + CI LSSN+ D Y+G C T S L LI
Sbjct: 1807 GNPSQPGRICAASLCGLCNGHGDCIHDALSSNVTCACLDGYTGQFCETAPSNLPLI 1862
>AF077534-9|AAC26286.1| 194|Caenorhabditis elegans Hypothetical
protein K07D4.2 protein.
Length = 194
Score = 25.8 bits (54), Expect = 8.7
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Frame = +1
Query: 52 FGVQQRRGRIEMAL--DGSG-IKLYRRLGVLEQAQRRRGALGQHVFVKPILQ 198
F V + +G MA D G I+ R+L ++QA ++G + +H+ +PI++
Sbjct: 60 FYVGKGKGERAMAYFKDACGNIQGSRKLTTIDQAWNKKGFVYKHIIWRPIIE 111
>AF016415-8|AAW88415.1| 297|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 32 protein.
Length = 297
Score = 25.8 bits (54), Expect = 8.7
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = +2
Query: 209 LCILERMNSCITPILSSNIVW 271
+C+L ++S +T +L+ N+VW
Sbjct: 8 VCLLGAVSSLVTIVLNGNLVW 28
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,460,998
Number of Sequences: 27780
Number of extensions: 180173
Number of successful extensions: 496
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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