Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28i19
         (351 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    24   0.45 
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    24   0.45 
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    23   1.4  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    23   1.4  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          20   7.4  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    20   7.4  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    20   7.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      20   7.4  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 24.2 bits (50), Expect = 0.45
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 220 QDAQRGGAAKLVLRTRVAPVHRV 152
           +D   GG A  + +T VAP+ RV
Sbjct: 12  KDFLAGGVAAAISKTTVAPIERV 34


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 24.2 bits (50), Expect = 0.45
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 220 QDAQRGGAAKLVLRTRVAPVHRV 152
           +D   GG A  + +T VAP+ RV
Sbjct: 12  KDFLAGGVAAAISKTTVAPIERV 34


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 121 RLGVLEQAQRRRGAL--GQHVFVKPILQLRRVVHLG 222
           +LG L+    +R  +  G  ++V+P+ ++  VVH G
Sbjct: 65  QLGCLKACVMKRIEMLKGTELYVEPVYKMIEVVHAG 100


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 121 RLGVLEQAQRRRGAL--GQHVFVKPILQLRRVVHLG 222
           +LG L+    +R  +  G  ++V+P+ ++  VVH G
Sbjct: 65  QLGCLKACVMKRIEMLKGTELYVEPVYKMIEVVHAG 100


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 196 QLRRVVHLGAHEQLYNAYFVE 258
           Q+R   +   H+Q+ N Y++E
Sbjct: 252 QIRGEFYFFLHKQVLNRYYLE 272


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 305 ALNTAIRCICHPKQYYSTK*ALYSCSC 225
           A+N     +C P    ++K  L SC+C
Sbjct: 38  AVNGHCSHLCLPAPRINSKSPLLSCAC 64


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 305 ALNTAIRCICHPKQYYSTK*ALYSCSC 225
           A+N     +C P    ++K  L SC+C
Sbjct: 38  AVNGHCSHLCLPAPRINSKSPLLSCAC 64


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 196 QLRRVVHLGAHEQLYNAYFVE 258
           Q+R   +   H+Q+ N Y++E
Sbjct: 252 QIRGEFYFFLHKQVLNRYYLE 272


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,805
Number of Sequences: 438
Number of extensions: 2174
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)