Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28i17
         (106 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1204 + 34936696-34936698,34936809-34936944,34937794-349378...    36   0.004
02_01_0089 + 633642-633644,633728-633863,635356-635457,635565-63...    36   0.004
08_01_0195 + 1612938-1613003,1613026-1613161,1614624-1614725,161...    35   0.010

>02_05_1204 +
          34936696-34936698,34936809-34936944,34937794-34937895,
          34938153-34938199
          Length = 95

 Score = 35.9 bits (79), Expect = 0.004
 Identities = 15/19 (78%), Positives = 15/19 (78%)
 Frame = +3

Query: 42 MTKGTXSFGKRXNXTHTLC 98
          M KGT SFGKR N THTLC
Sbjct: 1  MGKGTGSFGKRRNKTHTLC 19


>02_01_0089 +
          633642-633644,633728-633863,635356-635457,635565-635608
          Length = 94

 Score = 35.9 bits (79), Expect = 0.004
 Identities = 15/19 (78%), Positives = 15/19 (78%)
 Frame = +3

Query: 42 MTKGTXSFGKRXNXTHTLC 98
          M KGT SFGKR N THTLC
Sbjct: 1  MGKGTGSFGKRRNKTHTLC 19


>08_01_0195 +
          1612938-1613003,1613026-1613161,1614624-1614725,
          1614833-1614876
          Length = 115

 Score = 34.7 bits (76), Expect = 0.010
 Identities = 14/17 (82%), Positives = 14/17 (82%)
 Frame = +3

Query: 48 KGTXSFGKRXNXTHTLC 98
          KGT SFGKR N THTLC
Sbjct: 24 KGTGSFGKRRNKTHTLC 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,790,516
Number of Sequences: 37544
Number of extensions: 9949
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 14,793,348
effective HSP length: 16
effective length of database: 14,192,644
effective search space used: 255467592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)