Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28i12
         (234 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|...    25   1.0  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    25   1.3  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    23   4.1  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    23   7.1  
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    23   7.1  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    23   7.1  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    22   9.4  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    22   9.4  

>SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -1

Query: 207 FKTCKTSMISPLHIVYNKEEKKT*SFIYDLHSI 109
           FK C      PL +VY   +K    FIYD HS+
Sbjct: 96  FKLCYDDETLPLWMVYVLNDKSELVFIYD-HSL 127


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -1

Query: 120 LHSICLASVCLDFVHFNVDCWCNFNVRAWYDRML 19
           LH++ + S  L+F    ++C C F  + W D ++
Sbjct: 151 LHNMYMGSTHLNFKKLVLECECAFQ-KTWLDELV 183


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 228 FYHFIYLFKTCKTSMISPLHIVY 160
           F +F  +  +CK+  + PLHI Y
Sbjct: 667 FSYFSQVACSCKSITVCPLHIEY 689


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 234 FFFYHFIYLFKTCKTSMISPL 172
           F   HF+ LF  C+T + S L
Sbjct: 115 FMIEHFLSLFAFCRTILFSLL 135


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 81  QNQDKQMLSKCCGGHK 128
           +N+DK ML+KC   +K
Sbjct: 220 ENKDKYMLNKCSAENK 235


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = -1

Query: 207 FKTCKTSMISPLHIVYNKEEKKT*SFI-YD-LHSICLASVCLDFVHFNVDCWCNFNVR 40
           F+     ++  LH V ++      + I YD  H   L    +D+V+F  D    FN+R
Sbjct: 401 FEELAIGLVKELHRVNSRYYTYQQACIPYDGFHKHYLPGTAIDWVYFAADVAWPFNIR 458


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 173  KGEIIDVLHVLNK 211
            K +I DV+HVLNK
Sbjct: 1283 KYKITDVIHVLNK 1295


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -2

Query: 101 HLFVLILCILMLIA 60
           HL VL++C++ L+A
Sbjct: 222 HLIVLVVCMICLLA 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 932,385
Number of Sequences: 5004
Number of extensions: 15669
Number of successful extensions: 26
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 57
effective length of database: 2,077,250
effective search space used: 41545000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)