Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28i12
         (234 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0704 - 22293955-22294255,22294276-22294602,22294794-222948...    27   1.6  
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798...    26   4.9  
02_05_0036 - 25292150-25293124,25294021-25294206,25294704-252948...    25   6.5  
04_04_0046 + 22344503-22345075                                         25   8.6  
01_05_0537 - 23019590-23020126,23020841-23021022,23021141-230213...    25   8.6  

>12_02_0704 -
           22293955-22294255,22294276-22294602,22294794-22294840,
           22297252-22297316,22297439-22297541
          Length = 280

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +1

Query: 118 EVINKRLSFFFLFIIYNM*RRNHRRFTCFK 207
           E I K LS F L  +++   RNHRR TC K
Sbjct: 207 EKIEKTLSTFHLSAMHST--RNHRRMTCKK 234


>09_04_0087 +
           14476539-14476675,14478876-14479635,14479720-14479871,
           14479958-14480024,14480632-14480831,14480915-14481068,
           14481585-14481669,14481766-14481857,14482575-14482766,
           14482867-14482992,14483072-14483125,14483494-14483550,
           14484509-14484606,14484703-14485038,14485116-14485203,
           14486891-14487016,14487082-14487138,14488054-14488133,
           14488228-14488270,14488948-14489034,14489331-14489420,
           14489996-14490054,14490141-14490231,14490330-14490495,
           14490662-14490755,14491787-14492909
          Length = 1537

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -1

Query: 135 SFIYDLHSIC--LASVCLDFVHFNVDCWC 55
           SF +  +S+   + + CL F+H N++ WC
Sbjct: 583 SFTFQPNSLANYVFASCLAFIHLNLNGWC 611


>02_05_0036 -
           25292150-25293124,25294021-25294206,25294704-25294874,
           25295135-25295353,25295461-25295712,25295802-25295903,
           25296487-25296684,25296762-25297046,25297640-25297709,
           25297797-25297970,25298825-25298952,25299059-25299163,
           25299686-25300030,25300361-25300563,25300964-25301045,
           25301667-25301744
          Length = 1190

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 108 CLASVCLDFVHFNVDCWCN 52
           CL S   DF H N+D  CN
Sbjct: 588 CLKSCLDDFSHHNIDVACN 606


>04_04_0046 + 22344503-22345075
          Length = 190

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 33  TMPVH*NYTSNQH*NAQNQDKQMLSKCCGG 122
           T P    ++   H  AQ+     LS CCGG
Sbjct: 7   TAPAKTRFSLFSHEEAQHPHPHALSACCGG 36


>01_05_0537 -
           23019590-23020126,23020841-23021022,23021141-23021377,
           23021460-23021567,23022107-23022257
          Length = 404

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = -1

Query: 135 SFIYDLHSICLASVCLDFVHFNVDCWCNFNVRAWYDRMLVSRH 7
           SF   L S C     +++  F VD W         D+ LVS +
Sbjct: 228 SFTLPLCSPCRGMYVVEYALFEVDLWVKMEGGVSNDKQLVSAY 270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,534,176
Number of Sequences: 37544
Number of extensions: 84875
Number of successful extensions: 159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 14,793,348
effective HSP length: 56
effective length of database: 12,690,884
effective search space used: 266508564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)