Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28i12
         (234 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC019826-1|AAH19826.1|  183|Homo sapiens COMM domain containing ...    30   1.1  
BC015145-1|AAH15145.1|  183|Homo sapiens COMM domain containing ...    30   1.1  
BC008371-1|AAH08371.1|  183|Homo sapiens COMM domain containing ...    30   1.1  
AY542163-1|AAS22245.1|  183|Homo sapiens COMMD8 protein.               30   1.1  
AK000509-1|BAA91216.1|  183|Homo sapiens protein ( Homo sapiens ...    30   1.1  
AF182421-1|AAG14957.1|  132|Homo sapiens MDS022 protein.               30   1.1  
AL162254-5|CAI16291.1|  324|Homo sapiens olfactory receptor, fam...    27   8.1  
AB065492-1|BAC05744.1|  324|Homo sapiens seven transmembrane hel...    27   8.1  

>BC019826-1|AAH19826.1|  183|Homo sapiens COMM domain containing 8
           protein.
          Length = 183

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 53  LHQQSTLKCTKSRQTDAKQMLWR 121
           LHQ++ +KC KSR+ + KQ L R
Sbjct: 85  LHQETIMKCVKSRKDEIKQALSR 107


>BC015145-1|AAH15145.1|  183|Homo sapiens COMM domain containing 8
           protein.
          Length = 183

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 53  LHQQSTLKCTKSRQTDAKQMLWR 121
           LHQ++ +KC KSR+ + KQ L R
Sbjct: 85  LHQETIMKCVKSRKDEIKQALSR 107


>BC008371-1|AAH08371.1|  183|Homo sapiens COMM domain containing 8
           protein.
          Length = 183

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 53  LHQQSTLKCTKSRQTDAKQMLWR 121
           LHQ++ +KC KSR+ + KQ L R
Sbjct: 85  LHQETIMKCVKSRKDEIKQALSR 107


>AY542163-1|AAS22245.1|  183|Homo sapiens COMMD8 protein.
          Length = 183

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 53  LHQQSTLKCTKSRQTDAKQMLWR 121
           LHQ++ +KC KSR+ + KQ L R
Sbjct: 85  LHQETIMKCVKSRKDEIKQALSR 107


>AK000509-1|BAA91216.1|  183|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20502 fis, clone KAT09323. ).
          Length = 183

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 53  LHQQSTLKCTKSRQTDAKQMLWR 121
           LHQ++ +KC KSR+ + KQ L R
Sbjct: 85  LHQETIMKCVKSRKDEIKQALSR 107


>AF182421-1|AAG14957.1|  132|Homo sapiens MDS022 protein.
          Length = 132

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 53  LHQQSTLKCTKSRQTDAKQMLWR 121
           LHQ++ +KC KSR+ + KQ L R
Sbjct: 34  LHQETIMKCVKSRKDEIKQALSR 56


>AL162254-5|CAI16291.1|  324|Homo sapiens olfactory receptor, family
           1, subfamily L, memberr RAS oncogene family) protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -1

Query: 234 FFFYHFIYLFKTCKTSMISPLHIVYNKEEKKT*SFIYDLHSICLASVCLDFVHFNVDCW 58
           +FF   +     C T++I P  +V    EKKT S+     + CLA +    V  N+D +
Sbjct: 60  YFFLSILSFADICYTTVIVPKMLVNFLSEKKTISY-----AECLAQMYFFLVFGNIDSY 113


>AB065492-1|BAC05744.1|  324|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -1

Query: 234 FFFYHFIYLFKTCKTSMISPLHIVYNKEEKKT*SFIYDLHSICLASVCLDFVHFNVDCW 58
           +FF   +     C T++I P  +V    EKKT S+     + CLA +    V  N+D +
Sbjct: 60  YFFLSILSFADICYTTVIVPKMLVNFLSEKKTISY-----AECLAQMYFFLVFGNIDSY 113


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,653,792
Number of Sequences: 237096
Number of extensions: 568825
Number of successful extensions: 839
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 76,859,062
effective HSP length: 56
effective length of database: 63,581,686
effective search space used: 1335215406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)