Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28i12
         (234 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81585-4|CAB04687.1|  345|Caenorhabditis elegans Hypothetical pr...    28   1.0  
U61946-9|AAC24393.1|  202|Caenorhabditis elegans Hypothetical pr...    27   1.8  
Z81472-3|CAB03888.2|  468|Caenorhabditis elegans Hypothetical pr...    26   3.1  
U61946-6|AAC24391.1|  137|Caenorhabditis elegans Hypothetical pr...    26   3.1  
U23139-3|AAK31486.2|  275|Caenorhabditis elegans Hypothetical pr...    26   3.1  
Z83231-3|CAB05751.1|  247|Caenorhabditis elegans Hypothetical pr...    25   5.4  
AF016670-2|AAB66100.1|  178|Caenorhabditis elegans Hypothetical ...    25   5.4  
Z66564-6|CAA91473.4|  737|Caenorhabditis elegans Hypothetical pr...    25   7.2  
AY887904-1|AAX34416.1|  737|Caenorhabditis elegans anion transpo...    25   7.2  

>Z81585-4|CAB04687.1|  345|Caenorhabditis elegans Hypothetical
           protein T05E12.4 protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 17  TNILSYHARTLKLHQQSTLKCTKSRQTD--AKQMLW 118
           T IL    RT+K  + + LK T S Q+D   K +LW
Sbjct: 220 TTILILQLRTIKKRKANLLKSTSSNQSDNKFKMILW 255


>U61946-9|AAC24393.1|  202|Caenorhabditis elegans Hypothetical
           protein F47C12.8 protein.
          Length = 202

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 135 SFIYDLHSICLASVCL-DFVHFNVDCWCNFNVRAWYDRMLVSRHD 4
           +F+  L  + LAS+C  D VHF V   C+  ++ W   + V   D
Sbjct: 2   NFLRFLIPLFLASICCSDPVHFEVFMHCDPAIKHWCGTLYVYEED 46


>Z81472-3|CAB03888.2|  468|Caenorhabditis elegans Hypothetical
           protein C16D6.2 protein.
          Length = 468

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 23  ILSYHARTLKLHQQSTLKCTKSRQTDAKQM 112
           I+SY A +LK+ Q   LK  K ++TD  +M
Sbjct: 208 IISYTAISLKIGQSMILKGAKKQKTDNWEM 237


>U61946-6|AAC24391.1|  137|Caenorhabditis elegans Hypothetical
           protein F47C12.6 protein.
          Length = 137

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -1

Query: 87  DFVHFNVDCWCNFNVRAWYDRMLVSRHD 4
           D +HF+V   C+ +++ W   +++  HD
Sbjct: 18  DPIHFDVAIHCDSSIKFWCGDIIIYEHD 45


>U23139-3|AAK31486.2|  275|Caenorhabditis elegans Hypothetical
           protein F13H8.4 protein.
          Length = 275

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = -2

Query: 125 MTSTAFA*HLFVLILCILMLIAGVILMYG 39
           +TSTAF+ ++   + C+L +I GV+L +G
Sbjct: 152 LTSTAFSWYVIGWVGCVL-IILGVLLFFG 179


>Z83231-3|CAB05751.1|  247|Caenorhabditis elegans Hypothetical
           protein F57G9.3 protein.
          Length = 247

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 117 HSICLASVCLDFVHFNVDCWCNFNVRAW 34
           ++I   SV ++F HF + CW N +   W
Sbjct: 151 YTILAFSVIMEFYHFYMCCW-NISSNLW 177


>AF016670-2|AAB66100.1|  178|Caenorhabditis elegans Hypothetical
           protein K02F6.6 protein.
          Length = 178

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 50  KLHQQSTLKCTKSRQTDAKQ 109
           +L+++ T KC KSR+TD  Q
Sbjct: 13  QLYRKQTEKCKKSRRTDVLQ 32


>Z66564-6|CAA91473.4|  737|Caenorhabditis elegans Hypothetical
           protein F52D10.1 protein.
          Length = 737

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -2

Query: 98  LFVLILCILMLIAGVILMYGHGMTGC 21
           +F+ +  I+  I  ++ +Y HG  GC
Sbjct: 382 VFIALALIIKAIMAIVHVYTHGYLGC 407


>AY887904-1|AAX34416.1|  737|Caenorhabditis elegans anion
           transporter ABTS-2 protein.
          Length = 737

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -2

Query: 98  LFVLILCILMLIAGVILMYGHGMTGC 21
           +F+ +  I+  I  ++ +Y HG  GC
Sbjct: 382 VFIALALIIKAIMAIVHVYTHGYLGC 407


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,227,450
Number of Sequences: 27780
Number of extensions: 92761
Number of successful extensions: 218
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 12,740,198
effective HSP length: 57
effective length of database: 11,156,738
effective search space used: 223134760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)