Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28i12
         (234 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    20   4.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    19   6.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    19   6.0  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    19   8.0  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          19   8.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      19   8.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    19   8.0  

>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 19.8 bits (39), Expect = 4.6
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = -1

Query: 177 PLHIVYNKEEKKT*SFIYDLHSICLASV 94
           PLH    +E KK    +  ++ +C+ ++
Sbjct: 250 PLHADQAEEYKKIQQILIRMNKLCIQTI 277


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 19.4 bits (38), Expect = 6.0
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -2

Query: 98  LFVLILCILMLIAGVILMYGHGM 30
           LF+ I+C +  + G+  +   GM
Sbjct: 417 LFIAIVCFVSYLIGLFCITEGGM 439


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 19.4 bits (38), Expect = 6.0
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -2

Query: 98  LFVLILCILMLIAGVILMYGHGM 30
           LF+ I+C +  + G+  +   GM
Sbjct: 470 LFIAIVCFVSYLIGLFCITEGGM 492


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 80  CILMLIAGVILMYGHGMTGC*FHD 9
           C++M  AGV  + G+ + G  F D
Sbjct: 76  CLVMTFAGVNDLLGYWVFGPRFCD 99


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = +3

Query: 147 FPLYYIQYVKE 179
           FP+Y  +Y++E
Sbjct: 316 FPIYKYKYIRE 326


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = +3

Query: 147 FPLYYIQYVKE 179
           FP+Y  +Y++E
Sbjct: 316 FPIYKYKYIRE 326


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +1

Query: 25  PVIPCPYI 48
           PV PCP+I
Sbjct: 231 PVKPCPWI 238


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,370
Number of Sequences: 438
Number of extensions: 1055
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  3772710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)