Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28i10
(604 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy... 29 0.52
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 29 0.52
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 28 1.2
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3... 28 1.2
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 28 1.2
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 26 4.9
SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces ... 26 4.9
SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 25 6.4
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 25 8.5
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy... 25 8.5
>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 370
Score = 29.1 bits (62), Expect = 0.52
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +1
Query: 469 RKNQPLYPEKKKTSLYPERKIHRI-PKEEFIII 564
+K+ L PEK+ + +P+ IH I P +EF+I+
Sbjct: 198 KKDSSLPPEKQIVTAFPDVVIHNIDPDDEFLIL 230
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 29.1 bits (62), Expect = 0.52
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 24 ERSSLLQPLDLNGQVFSYPPKSVRVTVVGPP 116
+ S++LQPL++N + PPKS+ +++ P
Sbjct: 518 KHSAVLQPLEVNRSISIPPPKSISPSILHKP 548
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -1
Query: 538 YDEFFFQ-DTVMFSFFQDTVVDSFVRIQ 458
Y+EF+ Q DT FQDT VD F +Q
Sbjct: 1703 YNEFYSQLDTSTSDIFQDTSVDGFPDLQ 1730
>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 27.9 bits (59), Expect = 1.2
Identities = 23/77 (29%), Positives = 35/77 (45%)
Frame = +2
Query: 236 SSPYLEENKRNH*VCPEPVRAILHPPYPERRLNHCILKEDSTTVS*KKTQPLYPHTISTE 415
SS Y + R H + P P R L P P RRL ++ S V ++ P+T+++E
Sbjct: 155 SSAYYDSRSRLHGIQPPPKRRTLSP--PPRRLADPVVVGSSRYVE-EEVYRRPPYTLASE 211
Query: 416 SKKKNHCILKEGKSLYP 466
+ + G S YP
Sbjct: 212 -VPSSASAYQAGYSSYP 227
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +3
Query: 234 AHRRILKKTKEITKSVQNQSAPYYIHRILKEDSTTVS*KKTQPPYPERRLN 386
+H R +K K+ KS+ ++ P+ +H L S + Q P E+RLN
Sbjct: 1125 SHNRGIKVAKQKIKSIMSRIFPFSVHLPLDNSSELLK----QLPESEKRLN 1171
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 25.8 bits (54), Expect = 4.9
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +1
Query: 73 PILLNQCA*LSSDLHNFVFHFLKST*RI 156
P+ LN C ++ + +F+ FL+ST ++
Sbjct: 490 PLNLNVCCCIAEPIQSFILSFLRSTYKV 517
>SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 227
Score = 25.8 bits (54), Expect = 4.9
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = -1
Query: 448 FFQDTVIFLL*FSGYSMWIQWLSLLSGY 365
F ++FL+ F G+ W+ S+ S Y
Sbjct: 51 FIMAVMVFLVIFDGFPFWLSAFSIFSHY 78
>SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 273
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -2
Query: 453 FPSFRIQXXXXFDSVDIVCGYSG 385
+P F ++ + VDI CGY G
Sbjct: 71 YPDFDVESNKKVEIVDIGCGYGG 93
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.0 bits (52), Expect = 8.5
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -3
Query: 323 FQDTVDVVWRGLVLDRLSDFFCFLQDTAMSFSSRRRRSEDPGFLDPLTLP 174
+ T D+ R L DRLSD ++ R SE+PG P+T P
Sbjct: 188 YNKTTDIKARSL--DRLSDMT--RPKLLLNTKRSHRSSEEPGASSPVTSP 233
>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 472 KNQPLYPEKKKTSLYPERKIHRI-PKEEFIII 564
KN L PEK+ + P+ +H I +EF+++
Sbjct: 196 KNSNLEPEKQIVTALPDVVVHEITDDDEFVVL 227
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,494,319
Number of Sequences: 5004
Number of extensions: 53943
Number of successful extensions: 141
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -