Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28i10
(604 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical p... 30 1.5
Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical pr... 30 1.5
U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myos... 30 1.5
L10990-7|AAB59174.1| 378|Caenorhabditis elegans Hypothetical pr... 30 1.5
U41275-2|AAA82465.1| 438|Caenorhabditis elegans Hypothetical pr... 29 1.9
AF098986-5|AAC67426.1| 671|Caenorhabditis elegans Hypothetical ... 29 1.9
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 29 3.4
AF002197-6|AAD34661.1| 446|Caenorhabditis elegans Hypothetical ... 28 5.9
U59211-1|AAB09670.1| 420|Caenorhabditis elegans embryonic membr... 27 7.8
U53343-3|AAA96220.2| 420|Caenorhabditis elegans Innexin protein... 27 7.8
>Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical
protein F20G4.3 protein.
Length = 2003
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = -2
Query: 156 DSLRRF*KMKYEVMEVRRQSRALI*EDRRRLDRSGREVVEDLTARVER 13
D+L K++ EV EV+ +L+ E R++LD REV+E+L + E+
Sbjct: 1364 DALDAQEKIEKEVKEVK----SLLAEARKKLDEENREVMEELRKKKEK 1407
>Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical protein
F20G4.3 protein.
Length = 2003
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = -2
Query: 156 DSLRRF*KMKYEVMEVRRQSRALI*EDRRRLDRSGREVVEDLTARVER 13
D+L K++ EV EV+ +L+ E R++LD REV+E+L + E+
Sbjct: 1364 DALDAQEKIEKEVKEVK----SLLAEARKKLDEENREVMEELRKKKEK 1407
>U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myosin
heavy chain II protein.
Length = 2003
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = -2
Query: 156 DSLRRF*KMKYEVMEVRRQSRALI*EDRRRLDRSGREVVEDLTARVER 13
D+L K++ EV EV+ +L+ E R++LD REV+E+L + E+
Sbjct: 1364 DALDAQEKIEKEVKEVK----SLLAEARKKLDEENREVMEELRKKKEK 1407
>L10990-7|AAB59174.1| 378|Caenorhabditis elegans Hypothetical
protein C30A5.4 protein.
Length = 378
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +2
Query: 338 CILKEDSTTVS*KKTQPLYPHTISTESKKKNHCILKEGKSLYPDERINHCILKK 499
CI+KE S+ S KTQP TIS K + K+ + I + + KK
Sbjct: 24 CIIKEKSSVRSMAKTQPTSGRTISLSEINKPIALSKKNTEIKAAVEIQNRLTKK 77
>U41275-2|AAA82465.1| 438|Caenorhabditis elegans Hypothetical
protein T25D1.2 protein.
Length = 438
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 272 SDFFCFLQDTAMSFSSRRRRSEDPGF 195
S FFC T F R+RR E PG+
Sbjct: 363 SCFFCMSPGTLYKFGDRKRREERPGY 388
>AF098986-5|AAC67426.1| 671|Caenorhabditis elegans Hypothetical
protein C36C9.4 protein.
Length = 671
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 272 SDFFCFLQDTAMSFSSRRRRSEDPGF 195
S FFC T F R+RR E PG+
Sbjct: 291 SCFFCMSPGTLYKFGDRKRREERPGY 316
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = -2
Query: 378 FFQDTVVESSFRIQWLSLLSGYGGCSMARTGSGQT**FLL 259
F + TV++S I W +SG S+A+TGSG+T F+L
Sbjct: 149 FQKPTVIQS---ISWPIAMSGRDIISIAKTGSGKTLAFML 185
>AF002197-6|AAD34661.1| 446|Caenorhabditis elegans Hypothetical
protein F20H11.4 protein.
Length = 446
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 170 LVAALRDPKNPGPRIV 217
L+ ALRDPK PGP ++
Sbjct: 300 LLKALRDPKRPGPPVI 315
>U59211-1|AAB09670.1| 420|Caenorhabditis elegans embryonic membrane
protein protein.
Length = 420
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 230 KSSSPYLEENKRNH*VCPEPVRAILHPPYP 319
KS+SP LEE H PE ++ ++ P YP
Sbjct: 388 KSTSPGLEEGHHEHLYTPEKMK-LMAPDYP 416
>U53343-3|AAA96220.2| 420|Caenorhabditis elegans Innexin protein 3
protein.
Length = 420
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 230 KSSSPYLEENKRNH*VCPEPVRAILHPPYP 319
KS+SP LEE H PE ++ ++ P YP
Sbjct: 388 KSTSPGLEEGHHEHLYTPEKMK-LMAPDYP 416
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,705,759
Number of Sequences: 27780
Number of extensions: 304274
Number of successful extensions: 713
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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