Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28i09
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||...    27   1.8  
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2...    26   4.0  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    26   5.3  
SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.3  
SPBC16H5.04 |||pho88 family protein|Schizosaccharomyces pombe|ch...    26   5.3  
SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr ...    25   7.1  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    25   7.1  
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    25   9.3  

>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 359 FRQHDETSSQPKLAFRRQKLEIQCAV 436
           F+ HDE ++ P L +R+ K  I C +
Sbjct: 47  FQCHDELNTHPFLPWRKAKFHIPCVI 72


>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 238 CNCRTIKLNGMRSSKKIKRQ 179
           C C T+K NG+++ +KI RQ
Sbjct: 127 CMCCTVKDNGIKALEKIMRQ 146


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 435 FLLCFIIHDCRWQIAKHKAFIAHVEIKTSVFEFQR 539
           FL+  I    +W   +HKAF+    I+++ FE  R
Sbjct: 298 FLISSIYEIWKWCRIRHKAFLLDEHIRSNKFEDTR 332


>SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
 Frame = -1

Query: 236 QLPY-DKIKRHALEQENKTPNALESCVLFYKDS--EIRITYNRGDYEIMHLRMSGP--LI 72
           Q+ Y ++ ++  LE EN+  N      L    S  E+R+ +NR ++ + +  +SGP  + 
Sbjct: 62  QVKYTEEQEKEVLEVENRLQNLKIVKDLRQNPSFRELRMPFNRSNHSLTNNLLSGPGRIT 121

Query: 71  QPNTIYY 51
            P  I+Y
Sbjct: 122 VPPVIFY 128


>SPBC16H5.04 |||pho88 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 190

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/67 (22%), Positives = 34/67 (50%)
 Frame = +1

Query: 421 DPMRSFCFVSLFTIAAGKLPNTKRLLHTWKLKQVFSSFNGSKLPSSLKTLIIVFNTSCVK 600
           +P      +S+F +   ++ +  R    W L+ ++++ N   LP  + +L I+ + + +K
Sbjct: 11  NPQTKSIGISIFLMMITRVIDFSRPSLLWPLRILYATINEFNLPWFIYSLTIL-DLTVLK 69

Query: 601 IIELTTP 621
            +E  TP
Sbjct: 70  YVEPATP 76


>SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 238

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
 Frame = +3

Query: 447 FIIHDCRWQIAK------HKAFIAHVEIKTSVFEFQ 536
           F+I  C W I +         FI H  +   VFEFQ
Sbjct: 182 FLITSCNWTIQELEERFTKNGFIVHSTVPVPVFEFQ 217


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -1

Query: 155 FYKDSEIRITYNRGDYEIMHLRMSGPLIQPNTIYYS*IRIIIKLFVY 15
           F   SE  +  N  DY  ++L +    + P+ +YY+ I+   + F+Y
Sbjct: 259 FLTSSETDVPKNINDY--IYLLIDDRFVPPDRVYYTDIKHHFRKFLY 303


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 87  VRTFNSTQHNILQLNKNYY 31
           +R  +S +H ILQ+NKN Y
Sbjct: 188 IRIRSSYEHLILQINKNIY 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,720,523
Number of Sequences: 5004
Number of extensions: 57793
Number of successful extensions: 168
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)