Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28i07
(678 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 223 2e-59
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 134 1e-32
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 122 4e-29
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 116 3e-27
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 109 4e-25
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 93 4e-20
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 86 5e-18
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 72 9e-14
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 48 1e-06
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 30 0.35
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 26 5.8
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 26 5.8
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce... 26 5.8
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 7.6
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 223 bits (544), Expect = 2e-59
Identities = 122/206 (59%), Positives = 144/206 (69%)
Frame = +1
Query: 61 VSLNPIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVE 240
+SLNP +I R+SSF+GAIA+GDLVKSTLGPKGMDKIL S +SG +
Sbjct: 1 MSLNPHQIFNESGIQERGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQS--NSSGDIV 58
Query: 241 VXNDGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLH 420
V NDGATILKSI +DN AAK+LV++SKVQD+EVGDGTTSV V ++ K+H
Sbjct: 59 VTNDGATILKSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIH 118
Query: 421 PQTIIAGWRIASDAAKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFT 600
PQ II G+RIA+ A AL +S D+ + A R DLENIARTTLSSKILS +K HF
Sbjct: 119 PQVIIDGYRIATKTAIDALRASSIDNSS--DPAKFRSDLENIARTTLSSKILSQNKNHFA 176
Query: 601 KLAVDAVLRLKGSGNLKAIXIIKISG 678
+LAVDAVLRLKGS NL I IIKI G
Sbjct: 177 QLAVDAVLRLKGSTNLDNIQIIKILG 202
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 134 bits (324), Expect = 1e-32
Identities = 76/192 (39%), Positives = 119/192 (61%), Gaps = 7/192 (3%)
Frame = +1
Query: 124 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVXNDGATILKSIGVDNPAAKI 303
R + + AI ++VKS+LGP G+DK+LV + G V V NDGATIL + V++PA K+
Sbjct: 23 RNQNVLATTAIANVVKSSLGPVGLDKMLVD---DIGDVTVTNDGATILSLLDVEHPAGKV 79
Query: 304 LVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAE 483
LV++++ QD+EVGDGTTSV + +L++ K+HP TII G+R+A A + + +
Sbjct: 80 LVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIREAVKFMTD 139
Query: 484 ASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGN------ 645
+L + S L N+A+T++SSKI+ N + F+ +AVDA+L +K S +
Sbjct: 140 VLSCSVDSLGKES----LINVAKTSMSSKIIGNDSDFFSTMAVDAMLSVKTSNSKGETRY 195
Query: 646 -LKAIXIIKISG 678
+KA+ I+K G
Sbjct: 196 PVKAVNILKAHG 207
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 122 bits (295), Expect = 4e-29
Identities = 73/203 (35%), Positives = 109/203 (53%), Gaps = 1/203 (0%)
Frame = +1
Query: 73 PIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVXND 252
P+ +LK +S+ +A+ D +++TLGP G DK++V + G+V + ND
Sbjct: 9 PVIVLKEGTDDSQGRGQLLSNINACVAVQDTIRTTLGPLGADKLMVD---DRGEVVISND 65
Query: 253 GATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTI 432
GATI+K + + +PAAK LVD+++ QD EVGDGTTSV V +E + I
Sbjct: 66 GATIMKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLI 125
Query: 433 IAGWRIASDAAKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAV 612
I G+R A+ A + E + H +E LR L A T ++SK++ ++ FTK+ V
Sbjct: 126 IRGYRKAAQLAVNKIKEIAI-HLDLSDEGKLRDLLTKCASTAMNSKLIRSNSTFFTKMVV 184
Query: 613 DAVLRLKGSG-NLKAIXIIKISG 678
DAVL L N I I K+ G
Sbjct: 185 DAVLTLDQEDLNENMIGIKKVPG 207
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 116 bits (279), Expect = 3e-27
Identities = 72/190 (37%), Positives = 112/190 (58%), Gaps = 5/190 (2%)
Frame = +1
Query: 124 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVXNDGATILKSIGVDNPAAKI 303
R+S+ + A ++ D ++++LGPKGMDK ++ G+ G+V + NDGATILK + V +PAAK+
Sbjct: 21 RLSNIMAARSVADAIRTSLGPKGMDK-MIQTGK--GEVILTNDGATILKHLSVLHPAAKM 77
Query: 304 LVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAE 483
LVD+S QD E GDGTTSV + KL+++ +HP I ++ A+ + E
Sbjct: 78 LVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGFTVDCMKE 137
Query: 484 ASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVL-----RLKGSGNL 648
+ + + E+ LR A T+L+SKI+S + +AVDAVL R+ + +L
Sbjct: 138 NALAIELSDRESLLRA-----ATTSLNSKIVSQYSNLLAPIAVDAVLKVIDPRVATNVDL 192
Query: 649 KAIXIIKISG 678
K I I+K G
Sbjct: 193 KDIRIVKKLG 202
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 109 bits (262), Expect = 4e-25
Identities = 64/165 (38%), Positives = 97/165 (58%)
Frame = +1
Query: 130 SSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVXNDGATILKSIGVDNPAAKILV 309
S + + ++V+++LGP+G+DKIL+S G++ V NDGATIL + V++ AK+LV
Sbjct: 38 SHILATKTVANIVRTSLGPRGLDKILIS---PDGEITVTNDGATILDQMEVEHQIAKLLV 94
Query: 310 DMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEAS 489
+SK QD+E+GDGTT V V LI++ +HP I G+ A A + L +A
Sbjct: 95 QLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQVAVKHL-DAI 153
Query: 490 FDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVL 624
D E + +L A+T+L SK++S +HF +AVDAVL
Sbjct: 154 SDVVDFSPENT--TNLFRSAKTSLGSKVVSKAHDHFANIAVDAVL 196
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 92.7 bits (220), Expect = 4e-20
Identities = 54/192 (28%), Positives = 103/192 (53%)
Frame = +1
Query: 70 NPIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVXN 249
+P+ ++ +MS+ A A+ D++++ LGP+ M K+L+ G V + N
Sbjct: 3 SPVFVMNTNGNRQVGHKAQMSNIQAAKAVADVIRTCLGPRAMLKMLLD---PVGSVLLTN 59
Query: 250 DGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQT 429
DG IL+ I V +PAAK ++++++ QDEEVGDGTTSV + L+++K+HP
Sbjct: 60 DGHAILREIEVAHPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVV 119
Query: 430 IIAGWRIASDAAKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLA 609
+I ++ A + A + E + N+++ ++ + RT + +K+++ + LA
Sbjct: 120 MIRSFKQALEDALSIIDEITL--PVNVDD---NAEMFRLIRTCIGTKLVARWSDLMCHLA 174
Query: 610 VDAVLRLKGSGN 645
+ AV + + N
Sbjct: 175 LRAVRTVASTSN 186
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 85.8 bits (203), Expect = 5e-18
Identities = 53/163 (32%), Positives = 81/163 (49%)
Frame = +1
Query: 145 AIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVXNDGATILKSIGVDNPAAKILVDMSKV 324
AI + D++KS LGP G K+LV +G +++ DG +L + + NP A + +
Sbjct: 25 AIGLQDVLKSNLGPTGTTKMLVD---GAGAIKLTKDGKVLLTEMQIQNPTASCIAKAATA 81
Query: 325 QDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEASFDHQK 504
QD+ GDGTTSV + I + LHP I G+ +A + A L D +
Sbjct: 82 QDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLAKNEALTFLDSFKTDFEV 141
Query: 505 NLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLK 633
+ R L N+A+T+LS+KI S E VDA+L ++
Sbjct: 142 D------REVLLNVAKTSLSTKISSKVVESLAPAVVDAILTIR 178
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 71.7 bits (168), Expect = 9e-14
Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 4/179 (2%)
Frame = +1
Query: 154 IGDLVKSTLGPKGMDKILVSCGRNSGQVEVXNDGATILKSIGVDNPAAKILVDMSKVQDE 333
+ ++ +++LGP G +KI+V+ + Q + ND ATI++ + V +PAAK++VD ++ Q+
Sbjct: 38 LSEITRTSLGPNGKNKIVVN---HLQQTFLTNDAATIIRELEVIHPAAKLVVDATQQQEN 94
Query: 334 EVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEASFDHQKNLN 513
E+GD V V +I L P I G+ +A + L E D +
Sbjct: 95 ELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGYEMALSHTMEVLEEICAD---KIE 151
Query: 514 EASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRL----KGSGNLKAIXIIKISG 678
+L RT +SSK N ++ + L A+L + N+ I ++KI G
Sbjct: 152 TVESEKELIKAIRTCISSKQYGN-EDFLSDLVAKAILTVLPKDPSKFNVDNIRVVKIMG 209
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 48.0 bits (109), Expect = 1e-06
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Frame = +1
Query: 124 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVXNDGATILKSIGV----DNP 291
R S G + V TLGPKG + ++ + G ++ DG T+ +S+ + +N
Sbjct: 44 RASLLTGVDTLARAVSVTLGPKGRNVLI---DQPFGSPKITKDGVTVARSVSLKDKFENL 100
Query: 292 AAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASD 459
A+++ D++ +E GDGTT+ TV + + +P + G ++A D
Sbjct: 101 GARLVQDVASKTNEVAGDGTTTATVLTRAIFSETVRNVAAGCNPMDLRRGIQLAVD 156
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 29.9 bits (64), Expect = 0.35
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +1
Query: 523 LRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGNLKAIXIIK 669
L V E++ LS LS +K T ++ +LR GS LKAI ++K
Sbjct: 518 LPVKYEHVVFCNLSEFQLSLYKHFITSPEINKILRGTGSQPLKAIGLLK 566
>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
reductase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1053
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +3
Query: 546 RTDHTELKDPFKSQRAFHKISS*CSFAFERI 638
+ D +L +P+++ FH S C F F+ +
Sbjct: 105 KVDVAQLVEPYRNDCIFHDASGACHFFFKEV 135
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 25.8 bits (54), Expect = 5.8
Identities = 22/66 (33%), Positives = 31/66 (46%)
Frame = +1
Query: 148 IAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVXNDGATILKSIGVDNPAAKILVDMSKVQ 327
IA+ D+ S LG G+ RN G + DG T LKS+GV + K+ VQ
Sbjct: 324 IAVPDV--SQLGIPGVKPEAYRDSRNFGGRDA--DGVTGLKSLGVRDLTYKLSFLACMVQ 379
Query: 328 DEEVGD 345
++ D
Sbjct: 380 PDDAND 385
>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2
Query: 278 PIDFNIVAPSFXTST*PEFLPQETKILSIP 189
P+D ++ +P TST PE LP+E S+P
Sbjct: 408 PLDGDVESPH-PTSTMPEALPREPLSFSLP 436
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 556 TLSSKILSNHKEHFTKLAVDAVLRLKGSGNLKAIXIIK 669
T +KILS+H E TK V + GS +L A + K
Sbjct: 2222 TTHAKILSSHPEWDTKAVTLTVSYIPGSISLAAYTVSK 2259
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.133 0.361
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,434,755
Number of Sequences: 5004
Number of extensions: 44318
Number of successful extensions: 119
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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