Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28i06
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    29   0.70 
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    29   0.70 
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    27   1.6  
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.8  
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc...    26   3.7  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   6.5  

>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 443 ISDDGDLREDLQKSIAECYRSDSN-FSSQATSDITNDEE 556
           + DDGD+ ED+ K     Y  +S+  S +  SD +N+ E
Sbjct: 127 VFDDGDIEEDMNKIHDAWYAFNSHELSDEENSDSSNERE 165


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -3

Query: 401 QKHYSKRRYRPHCSLVNFQFV 339
           +K ++KR YR HC+LV+  FV
Sbjct: 385 KKIFAKRYYRQHCALVDSSFV 405


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +3

Query: 447 QMTAI*GKTCRNLSQNATDPTRIFHLKQQATSQTTKNFRRLRSSSSW 587
           Q+ +I G T +++   A DP   F+L    T QTT+ F R +  ++W
Sbjct: 362 QLPSISGHT-KSVKGVAWDPEGKFYLSA-GTDQTTRLFARFKKDNAW 406


>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 394

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 410 DSDRCSEDFDRISDDGDLREDLQKSIAECYRSDSNFSSQATSDITNDEE 556
           +   CS + DR+S   D  ED + S  E    DS+    + S +++DE+
Sbjct: 216 EKQSCSSESDRVSQISDDEEDEEGSADEEDEEDSDV-ELSESSLSDDED 263


>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 20/69 (28%), Positives = 31/69 (44%)
 Frame = +3

Query: 342 KLKIYQGTVRPIATLRVVFLKATIAIGVVRTLTGYQMTAI*GKTCRNLSQNATDPTRIFH 521
           K+  Y    +P+ T+ +  L   + + VV+  T   +    G  C  L QNA   T +  
Sbjct: 249 KIHAYTEGGKPLRTIYLPKLLKKVFLDVVKPNTKKNLETC-GILCGKLRQNAFFITHLVI 307

Query: 522 LKQQATSQT 548
             Q+ATS T
Sbjct: 308 PLQEATSDT 316


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 18/68 (26%), Positives = 28/68 (41%)
 Frame = +2

Query: 398 FEGNDSDRCSEDFDRISDDGDLREDLQKSIAECYRSDSNFSSQATSDITNDEEFQATALV 577
           F+   SD  S D     D    +E + +SIAE     +   S++ +D TN E +  +   
Sbjct: 235 FDNLKSDSPSSDLHLGWDHTVSKESMSQSIAEVLNPYNKGVSRSLNDATNMETYHWSPFP 294

Query: 578 QFMDILND 601
                 ND
Sbjct: 295 PQFSTFND 302


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,123,132
Number of Sequences: 5004
Number of extensions: 38268
Number of successful extensions: 100
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)