Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28i06
         (607 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0035 - 27838495-27838655,27838750-27838897,27838987-278391...    33   0.23 
12_01_0010 + 74517-74529,76294-76394,76495-76526,76652-76662,804...    29   2.9  
11_01_0010 + 78629-78641,80422-80522,80633-80664,80790-80800,845...    29   2.9  
03_01_0223 - 1766292-1766442,1767621-1767676,1767798-1767891,176...    28   5.0  
04_03_0505 + 16628145-16628217,16628612-16628767,16628964-166291...    28   6.6  
04_04_1343 - 32781101-32781364,32782470-32782791,32784346-32784740     27   8.7  

>11_08_0035 - 27838495-27838655,27838750-27838897,27838987-27839192,
            27839291-27839972,27840074-27840247,27840963-27841181,
            27841281-27841400,27841540-27841680,27841762-27841801,
            27841969-27842129,27842506-27842589,27842659-27842721,
            27842808-27842885,27842980-27842984,27843228-27843313,
            27843354-27843544,27844089-27844166,27844255-27844365,
            27844757-27844927,27845026-27845198,27845748-27845928
          Length = 1090

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +2

Query: 401  EGNDSDRCSEDFDRISDDGDLREDLQKSIAECYRSDSNFSS-QATSDITNDEEFQ 562
            E  D+D   ED+++ SDD D+RE+ ++   + Y + +   S +   D   D+E Q
Sbjct: 979  EEEDTDEDDEDYNQDSDDDDVREETEEEFLQRYAAAAGGESIEIVEDGDIDDETQ 1033


>12_01_0010 +
           74517-74529,76294-76394,76495-76526,76652-76662,
           80420-80924,80999-81181,81282-81373,81491-81764,
           81840-82053,82158-82228,82403-82509,82967-83016,
           83125-83208,84060-84119,84196-84285,84824-84900,
           85022-85106,85224-85304,85492-85595,85793-85842,
           86625-86731,87603-87725,87838-87889,88090-88202,
           88265-88405,88513-88602
          Length = 969

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 435 LTGYQMTAI*GKTCRNLSQNATDPTRIFHLKQ 530
           +TGY    + G+ CR L  + TDP  I  ++Q
Sbjct: 208 MTGYTSKEVVGRNCRFLQGSGTDPHEIDKIRQ 239


>11_01_0010 +
           78629-78641,80422-80522,80633-80664,80790-80800,
           84559-85063,85136-85318,85419-85510,85628-85901,
           85977-86190,86295-86365,86540-86646,87104-87153,
           87262-87345,88197-88256,88333-88422,88961-89037,
           89160-89244,89362-89442,89630-89733,89931-89980,
           90764-90870,91743-91865,91978-92029,92230-92342,
           92404-92544,92656-92745
          Length = 969

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 435 LTGYQMTAI*GKTCRNLSQNATDPTRIFHLKQ 530
           +TGY    + G+ CR L  + TDP  I  ++Q
Sbjct: 208 MTGYTSKEVVGRNCRFLQGSGTDPHEIDKIRQ 239


>03_01_0223 -
           1766292-1766442,1767621-1767676,1767798-1767891,
           1768004-1768071,1768441-1769585,1770072-1770168,
           1770265-1770279
          Length = 541

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 473 GLPLDRRHLISCQSPHYTDRYRCLQKHYSKRRYRPHCSL 357
           G+P D RH+       YT   R  + HY K  ++P C +
Sbjct: 194 GIPADYRHMDGSGVNTYTLVNRAGKSHYVKFHWKPTCGV 232


>04_03_0505 +
           16628145-16628217,16628612-16628767,16628964-16629125,
           16629699-16629842,16629952-16630028,16630710-16630874,
           16630988-16631341
          Length = 376

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +2

Query: 395 VFEGNDSDRCSEDFDRISDDGDLREDLQKSIAECYRSDSNFSSQATSDITNDEEFQAT 568
           V  G D D C+ + + I   GD  +        C   ++N S +  + +TN +  QAT
Sbjct: 303 VVVGGDQDGCANEANDIDSSGDHHQVAAVVTKPC---NANASQEIINKMTNSDGMQAT 357


>04_04_1343 - 32781101-32781364,32782470-32782791,32784346-32784740
          Length = 326

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +1

Query: 466 GRPAEIYRRMLQIRLEFFISSNKRHHKRRRISGDCARPVHGYTE*P 603
           G PAE+  R L++   FF   ++   K R + G  A    GY   P
Sbjct: 57  GVPAELMARALELSAAFFALPDEEKAKARPVEGSEAPLPAGYARQP 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,908,378
Number of Sequences: 37544
Number of extensions: 226806
Number of successful extensions: 625
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)