Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28i06
         (607 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50027-7|CAA90332.3|  460|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z50027-6|CAO82026.1|  564|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U39744-4|AAK18885.4|  389|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    28   5.9  
AL110471-2|CAB63306.1|  479|Caenorhabditis elegans Hypothetical ...    27   7.9  

>Z50027-7|CAA90332.3|  460|Caenorhabditis elegans Hypothetical
           protein C39B10.2a protein.
          Length = 460

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = -2

Query: 381 SLSAALFPGKFSVCS*RPSSV--LTTSIFIAWPKS*PLRCDESPGLPNFCVYQPSNCQLS 208
           SL+   +P    +CS R  S   +   + + W    P+R +E  GLP F +   SN   +
Sbjct: 152 SLNLRYYPMDQQLCSIRVLSYAYIAKQVNVTWFDKNPVRFNEEIGLPEFQIEHVSNAYCN 211

Query: 207 RVLRY 193
              +Y
Sbjct: 212 GSYQY 216


>Z50027-6|CAO82026.1|  564|Caenorhabditis elegans Hypothetical
           protein C39B10.2b protein.
          Length = 564

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = -2

Query: 381 SLSAALFPGKFSVCS*RPSSV--LTTSIFIAWPKS*PLRCDESPGLPNFCVYQPSNCQLS 208
           SL+   +P    +CS R  S   +   + + W    P+R +E  GLP F +   SN   +
Sbjct: 152 SLNLRYYPMDQQLCSIRVLSYAYIAKQVNVTWFDKNPVRFNEEIGLPEFQIEHVSNAYCN 211

Query: 207 RVLRY 193
              +Y
Sbjct: 212 GSYQY 216


>U39744-4|AAK18885.4|  389|Caenorhabditis elegans Hypothetical
           protein C03F11.4 protein.
          Length = 389

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 446 SDDGD-LREDLQKSIAECYRSDSNFSSQATSDITN 547
           S+ GD   EDL+ +++EC    +  SS A +DI+N
Sbjct: 39  SESGDEYDEDLENAVSECSYQTATTSSVADTDISN 73


>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 261  SPGLPNFCVYQPSNCQLSRVLRYNRYYIS 175
            S G+P   V +PS+CQL R  R   + I+
Sbjct: 2364 SQGIPAISVVEPSSCQLPRKSRQKEHKIT 2392


>AL110471-2|CAB63306.1|  479|Caenorhabditis elegans Hypothetical
           protein T06D10.2 protein.
          Length = 479

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = +2

Query: 401 EGNDSDRCSEDFDRISDDGDL---REDLQKSIAECYRSDSNFSSQATSD 538
           E +D + C+ D D   D+ D     ED    +  CY SD      +TSD
Sbjct: 349 EPSDGEECNSDDDAEKDNDDDDGGEEDDGFFVPPCYLSDGEGDEDSTSD 397


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,766,967
Number of Sequences: 27780
Number of extensions: 219174
Number of successful extensions: 601
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)