Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28i06
         (607 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   4.1  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   4.1  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   4.1  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   4.1  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   4.1  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   4.1  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   5.4  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = +3

Query: 372 PIATLRVVFLKATIAIGVVRTLT 440
           P+    V  ++ T+A+GV++++T
Sbjct: 420 PLGRFAVRDMRQTVAVGVIKSVT 442


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -1

Query: 388 RSVAIGRTVPW*IFSLFIAPFICVNNFHFYRMA*VIAAALR*KP 257
           R  A  R V   + ++ +A FIC   FH  R+  V A   + KP
Sbjct: 275 RKSAAQRNVIRMLVAVVVAFFICWAPFHAQRLLAVYAQNSKDKP 318


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 559 KFFVVCDVACCLR*KIRVGSVAFCDRF 479
           K ++ CDV CC    + + ++A  DR+
Sbjct: 110 KLWLTCDVLCCTASILNLCAIAL-DRY 135


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 559 KFFVVCDVACCLR*KIRVGSVAFCDRF 479
           K ++ CDV CC    + + ++A  DR+
Sbjct: 110 KLWLTCDVLCCTASILNLCAIAL-DRY 135


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 559 KFFVVCDVACCLR*KIRVGSVAFCDRF 479
           K ++ CDV CC    + + ++A  DR+
Sbjct: 110 KLWLTCDVLCCTASILNLCAIAL-DRY 135


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 443 ISDDGDLREDLQKSIAECYRSDSNFSSQA 529
           ++ +  LRE  +K   +  RS++N SSQ+
Sbjct: 239 VNHEKALREQAKKMNVDSLRSNANTSSQS 267


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +3

Query: 372 PIATLRVVFLKATIAIGVVRTLT 440
           P+    V  ++ T+A+GV++ +T
Sbjct: 420 PLGRFAVRDMRQTVAVGVIKAVT 442


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,403
Number of Sequences: 438
Number of extensions: 3012
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)