Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28i03
(701 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT007050-1|AAP35699.1| 501|Homo sapiens chromodomain helicase D... 32 1.7
BC020810-1|AAH20810.1| 501|Homo sapiens chromodomain helicase D... 32 1.7
BC007347-1|AAH07347.1| 501|Homo sapiens chromodomain helicase D... 32 1.7
AF006514-1|AAB87382.1| 1739|Homo sapiens CHD2 protein. 32 1.7
DQ088985-1|AAZ85980.1| 135|Homo sapiens CDH2 isoform 1 protein. 31 5.3
BC064404-1|AAH64404.1| 719|Homo sapiens nucleolar protein 11 pr... 30 7.0
BC001726-1|AAH01726.2| 408|Homo sapiens NOL11 protein protein. 30 7.0
AY598333-1|AAT06744.1| 719|Homo sapiens L14 protein. 30 7.0
AL591543-1|CAI17285.1| 992|Homo sapiens ankyrin repeat domain 1... 30 7.0
AL110271-1|CAB53709.1| 314|Homo sapiens hypothetical protein pr... 30 7.0
AK023702-1|BAB14647.1| 719|Homo sapiens protein ( Homo sapiens ... 30 7.0
AB095935-1|BAC23111.1| 996|Homo sapiens KIAA2015 protein protein. 30 7.0
>BT007050-1|AAP35699.1| 501|Homo sapiens chromodomain helicase DNA
binding protein 2 protein.
Length = 501
Score = 32.3 bits (70), Expect = 1.7
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Frame = +3
Query: 435 GVIQLIMKSKLPYAIELQEWLLEEVIPQVLCTG-KYDPAIKQQEEKNKQLVTKLIATFTE 611
G IQ ++K K ++ W EE + Q G K K++E++ KQ + K+ E
Sbjct: 303 GEIQYLIKWK-GWSYIHSTWESEESLQQQKVKGLKKLENFKKKEDEIKQWLGKVSPEDVE 361
Query: 612 HTNALQAVVAQKTEELFKKQEFIERIIAIK 701
+ N Q + + EL K+ + +ER+IA+K
Sbjct: 362 YFNCQQELAS----ELNKQYQIVERVIAVK 387
>BC020810-1|AAH20810.1| 501|Homo sapiens chromodomain helicase DNA
binding protein 2 protein.
Length = 501
Score = 32.3 bits (70), Expect = 1.7
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Frame = +3
Query: 435 GVIQLIMKSKLPYAIELQEWLLEEVIPQVLCTG-KYDPAIKQQEEKNKQLVTKLIATFTE 611
G IQ ++K K ++ W EE + Q G K K++E++ KQ + K+ E
Sbjct: 303 GEIQYLIKWK-GWSYIHSTWESEESLQQQKVKGLKKLENFKKKEDEIKQWLGKVSPEDVE 361
Query: 612 HTNALQAVVAQKTEELFKKQEFIERIIAIK 701
+ N Q + + EL K+ + +ER+IA+K
Sbjct: 362 YFNCQQELAS----ELNKQYQIVERVIAVK 387
>BC007347-1|AAH07347.1| 501|Homo sapiens chromodomain helicase DNA
binding protein 2 protein.
Length = 501
Score = 32.3 bits (70), Expect = 1.7
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Frame = +3
Query: 435 GVIQLIMKSKLPYAIELQEWLLEEVIPQVLCTG-KYDPAIKQQEEKNKQLVTKLIATFTE 611
G IQ ++K K ++ W EE + Q G K K++E++ KQ + K+ E
Sbjct: 303 GEIQYLIKWK-GWSYIHSTWESEESLQQQKVKGLKKLENFKKKEDEIKQWLGKVSPEDVE 361
Query: 612 HTNALQAVVAQKTEELFKKQEFIERIIAIK 701
+ N Q + + EL K+ + +ER+IA+K
Sbjct: 362 YFNCQQELAS----ELNKQYQIVERVIAVK 387
>AF006514-1|AAB87382.1| 1739|Homo sapiens CHD2 protein.
Length = 1739
Score = 32.3 bits (70), Expect = 1.7
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Frame = +3
Query: 435 GVIQLIMKSKLPYAIELQEWLLEEVIPQVLCTG-KYDPAIKQQEEKNKQLVTKLIATFTE 611
G IQ ++K K ++ W EE + Q G K K++E++ KQ + K+ E
Sbjct: 303 GEIQYLIKWK-GWSYIHSTWESEESLQQQKVKGLKKLENFKKKEDEIKQWLGKVSPEDVE 361
Query: 612 HTNALQAVVAQKTEELFKKQEFIERIIAIK 701
+ N Q + + EL K+ + +ER+IA+K
Sbjct: 362 YFNCQQELAS----ELNKQYQIVERVIAVK 387
>DQ088985-1|AAZ85980.1| 135|Homo sapiens CDH2 isoform 1 protein.
Length = 135
Score = 30.7 bits (66), Expect = 5.3
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +3
Query: 492 WLLEEVIPQVLCTG-KYDPAIKQQEEKNKQLVTKLIATFTEHTNALQAVVAQKTEELFKK 668
W EE + Q G K K++E++ KQ + K+ E+ N Q + + EL K+
Sbjct: 13 WESEESLQQQKVKGLKKLENFKKKEDEIKQWLGKVSPEDVEYFNCQQELAS----ELNKQ 68
Query: 669 QEFIERIIAIK 701
+ +ER+IA+K
Sbjct: 69 YQIVERVIAVK 79
>BC064404-1|AAH64404.1| 719|Homo sapiens nucleolar protein 11
protein.
Length = 719
Score = 30.3 bits (65), Expect = 7.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 336 RCTYICIFYPRVCLQRLYNFHILNCWRCP 250
RC FYPR CL +L H+L+ CP
Sbjct: 443 RCKAEPSFYPRNCLMQLIQTHVLSYSLCP 471
>BC001726-1|AAH01726.2| 408|Homo sapiens NOL11 protein protein.
Length = 408
Score = 30.3 bits (65), Expect = 7.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 336 RCTYICIFYPRVCLQRLYNFHILNCWRCP 250
RC FYPR CL +L H+L+ CP
Sbjct: 132 RCKAEPSFYPRNCLMQLIQTHVLSYSLCP 160
>AY598333-1|AAT06744.1| 719|Homo sapiens L14 protein.
Length = 719
Score = 30.3 bits (65), Expect = 7.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 336 RCTYICIFYPRVCLQRLYNFHILNCWRCP 250
RC FYPR CL +L H+L+ CP
Sbjct: 443 RCKAEPSFYPRNCLMQLIQTHVLSYSLCP 471
>AL591543-1|CAI17285.1| 992|Homo sapiens ankyrin repeat domain 18A
protein.
Length = 992
Score = 30.3 bits (65), Expect = 7.0
Identities = 21/83 (25%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Frame = +3
Query: 450 IMKSKLPYAIELQEWLLEE-VIPQVLCTGKYDPAIKQQEEKNKQLVTKLIATFTEHTNAL 626
++K +L YAI+ E+ I ++ + + ++ N++++TK +A +++ N L
Sbjct: 336 MLKEEL-YAIKNDSLRKEKKYIQEIKSITEINANFEKSVRLNEKMITKTVARYSQQLNDL 394
Query: 627 QAVVAQKTEELFKKQEFIERIIA 695
+A A+ EL K++ ER+ A
Sbjct: 395 KAENARLNSELEKEKHNKERLEA 417
>AL110271-1|CAB53709.1| 314|Homo sapiens hypothetical protein
protein.
Length = 314
Score = 30.3 bits (65), Expect = 7.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 336 RCTYICIFYPRVCLQRLYNFHILNCWRCP 250
RC FYPR CL +L H+L+ CP
Sbjct: 38 RCKAEPSFYPRNCLMQLIQTHVLSYSLCP 66
>AK023702-1|BAB14647.1| 719|Homo sapiens protein ( Homo sapiens
cDNA FLJ13640 fis, clone PLACE1011221. ).
Length = 719
Score = 30.3 bits (65), Expect = 7.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 336 RCTYICIFYPRVCLQRLYNFHILNCWRCP 250
RC FYPR CL +L H+L+ CP
Sbjct: 443 RCKAEPSFYPRNCLMQLIQTHVLSYSLCP 471
>AB095935-1|BAC23111.1| 996|Homo sapiens KIAA2015 protein protein.
Length = 996
Score = 30.3 bits (65), Expect = 7.0
Identities = 21/83 (25%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Frame = +3
Query: 450 IMKSKLPYAIELQEWLLEE-VIPQVLCTGKYDPAIKQQEEKNKQLVTKLIATFTEHTNAL 626
++K +L YAI+ E+ I ++ + + ++ N++++TK +A +++ N L
Sbjct: 340 MLKEEL-YAIKNDSLRKEKKYIQEIKSITEINANFEKSVRLNEKMITKTVARYSQQLNDL 398
Query: 627 QAVVAQKTEELFKKQEFIERIIA 695
+A A+ EL K++ ER+ A
Sbjct: 399 KAENARLNSELEKEKHNKERLEA 421
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,927,035
Number of Sequences: 237096
Number of extensions: 1849420
Number of successful extensions: 5450
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5450
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8119219030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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