Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28h24
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    26   5.2  
SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual    26   5.2  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    25   6.9  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    25   6.9  
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    25   6.9  
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...    25   9.1  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.1  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    25   9.1  

>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 518 NHSNKRPPHRLNRPRRTANTSSKPRYHS 601
           NH N    H  NRP RT ++S  P  +S
Sbjct: 60  NHHNINIQHHPNRPFRTNSSSFSPNDYS 87


>SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +2

Query: 497 RRPLRQLNHSNKRPPHRLNRPRRTANTSSKPRYHSTDSET 616
           +R  RQ  H+N    H L  PR  +     P Y   D E+
Sbjct: 39  KRLFRQRAHANVLSDHELEYPRSPSEMDWSPYYPDFDVES 78


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +2

Query: 431 SESTFRRTGTAGSALATNNHNSRRPLRQLNHSNKRP--PHRLNRPRRTANTSSK 586
           ++ T   T + G+  +TN +N+ RP     HS+  P    R   P R +N SS+
Sbjct: 281 AQPTHNPTSSYGNGASTN-YNASRPPSNHPHSSNYPSSSRRKPSPDRYSNYSSR 333


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 524 SNKRPPHRLNRPRRTANTSSKPRYHSTDSE 613
           S+ +P H LN    T      P Y+S+ SE
Sbjct: 222 SDMQPTHELNESPSTPTAPDFPHYNSSPSE 251


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -1

Query: 165 TLLWTYRTSQHHHNTTRIKLITTLLHSQGYY-SWTGAKNVLQL 40
           TL ++ R  QH H  T+  LI  L    G Y  W G +  L L
Sbjct: 294 TLQYSVRLEQHFH-YTQDPLIIFLFEQNGTYDKWLGLETQLSL 335


>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +1

Query: 334 RKRRPSSNDATDDFG--DNFSGFDRFPFDDIPPEFREHFPSHWN 459
           ++  PSSN   ++ G  D+        F+  P    EH P++W+
Sbjct: 289 KRLSPSSNFDLNNLGGDDDLRSESSSDFESAPASILEHEPTNWD 332


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 509 RQLNHSNKRPPHRLNRPRRTANTSSKPRYH 598
           R L H N+ PP   +    + N+S  P YH
Sbjct: 453 RSLLHLNRPPPIETHYSYESNNSSFSPYYH 482


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 428 SSESTFRRTGTAGSALATNNHNSRRPLRQLNHSNKRPPH 544
           SS S  +++  +GS   TN+HN+    + L+H      H
Sbjct: 268 SSNSNLKKSSESGS---TNHHNNHESDKDLHHEGHHHHH 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,866,364
Number of Sequences: 5004
Number of extensions: 28285
Number of successful extensions: 115
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)