Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28h24
(633 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0223 - 15570099-15570226,15572948-15573055,15573295-15573550 33 0.25
01_07_0312 + 42677752-42678561,42678701-42678910,42679597-426797... 30 1.3
01_05_0808 - 25414486-25414677,25415114-25415290,25415839-254159... 30 1.3
10_01_0144 - 1705429-1706250 30 1.8
06_01_0458 + 3269069-3269081,3269113-3269741 29 3.1
01_01_1145 + 9073973-9074281,9075440-9075998,9076088-9076241,907... 29 3.1
08_02_1339 + 26252609-26252925,26253025-26253227,26253379-262535... 28 5.4
06_01_1106 + 9111560-9112942 28 7.1
03_06_0601 + 34991912-34992352,34993719-34994516 27 9.4
>03_03_0223 - 15570099-15570226,15572948-15573055,15573295-15573550
Length = 163
Score = 32.7 bits (71), Expect = 0.25
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -3
Query: 259 PSLPPPQTETPSQKQAVKGHSGTLVL*QAGINPPVDIPNITTPS*YD 119
PSLPPPQ P + + H LV+ G+ P +P++ +D
Sbjct: 74 PSLPPPQLADPRTRLLLPLHEDDLVVELPGLEPEQAVPDLDVEQLWD 120
>01_07_0312 +
42677752-42678561,42678701-42678910,42679597-42679704,
42679915-42680010,42680090-42680182,42680276-42680386,
42680482-42680514,42680592-42680642,42680960-42681037,
42681145-42681165
Length = 536
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +2
Query: 476 ATNNHNSRRPLRQLNHSNKRPPHRLNRPRRTANTSS 583
AT NH RP +++ S ++PPH+L R + A TSS
Sbjct: 35 ATENH---RP-KEIGPSGEKPPHKLLRAKGKAGTSS 66
>01_05_0808 -
25414486-25414677,25415114-25415290,25415839-25415928,
25416016-25416081,25416170-25416240,25416375-25416450,
25416567-25420098,25421464-25421834
Length = 1524
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +1
Query: 337 KRRPSSNDATDDFGDNFSGFDRF--PFDDIPPEFREHF 444
+R+ SS DA +GD F G +F FD +P ++ E F
Sbjct: 20 RRKASSTDAAAAYGDVFGGPPQFAVAFDGVPADYGEVF 57
>10_01_0144 - 1705429-1706250
Length = 273
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +2
Query: 425 PSSESTFRRTGTAGSALATNNHNSRRPLRQLNHSNKRPPHRLNRPRRTANTSSK 586
PS R+G +G+ A + +RR L Q H +RP P R TS++
Sbjct: 107 PSPLPRVARSGQSGAGRAPHQRRTRRQLGQSWHRRRRPTVADAAPARAVATSTE 160
>06_01_0458 + 3269069-3269081,3269113-3269741
Length = 213
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/47 (40%), Positives = 21/47 (44%)
Frame = +2
Query: 422 LPSSESTFRRTGTAGSALATNNHNSRRPLRQLNHSNKRPPHRLNRPR 562
LPS S RRTG +A H + L L N P HR RPR
Sbjct: 31 LPSHVSAVRRTG---EQVAVRCHVRTKGLVMLPRRNTPPRHRERRPR 74
>01_01_1145 +
9073973-9074281,9075440-9075998,9076088-9076241,
9077475-9077565,9077722-9077793,9077879-9078390,
9078854-9078923,9079514-9079579,9080266-9080570,
9080872-9081006,9081141-9081204,9081429-9081574,
9081669-9081773,9082310-9082490
Length = 922
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -3
Query: 274 ARSTRPSLPPPQTETPSQKQAVKGH 200
A++ +PS PPPQ++ P++ GH
Sbjct: 90 AQAQQPSPPPPQSQAPNRTHKFDGH 114
>08_02_1339 +
26252609-26252925,26253025-26253227,26253379-26253536,
26253802-26253870,26253980-26254461,26254558-26254766,
26254865-26254901,26254991-26255075,26255186-26255269,
26255344-26255412,26255520-26255663
Length = 618
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = -1
Query: 198 REHLCYSRQASTLLWTYRTSQHHHNTTRIKLITTLLHSQGYYSWTGAKNVLQLH 37
+E + ++QAS YR Q H L+T+++ +GY WT N L L+
Sbjct: 289 QEAILQTKQASDETLHYRVVQFKHEN----LLTSIICHKGYSLWTALYNHLVLN 338
>06_01_1106 + 9111560-9112942
Length = 460
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 250 PPPQTETPSQKQAVKGHSGTLVL*QAGINPPVDIPNITTP 131
P + +PS+ V G G L L +A +NPP+D P T P
Sbjct: 151 PHARVGSPSEPFEVDGLPG-LRLTRADLNPPIDEPEPTGP 189
>03_06_0601 + 34991912-34992352,34993719-34994516
Length = 412
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 265 WSELAARHPDIAARLRQRPATWARKRRPS 351
WSE ARHP++AA +R A + P+
Sbjct: 301 WSEYWARHPEMAAAASRRRGAAADEEGPA 329
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,136,692
Number of Sequences: 37544
Number of extensions: 214430
Number of successful extensions: 905
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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