Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28h24
(633 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC017359-1|AAH17359.1| 394|Homo sapiens SFRS11 protein protein. 32 1.5
AL353771-4|CAI22333.1| 389|Homo sapiens splicing factor, argini... 32 1.5
AL450998-13|CAH70861.1| 373|Homo sapiens SMART/HDAC1 associated... 30 5.9
AL450998-10|CAH70858.1| 3664|Homo sapiens SMART/HDAC1 associated... 30 5.9
AL034555-5|CAI19527.1| 373|Homo sapiens SMART/HDAC1 associated ... 30 5.9
AL034555-4|CAI19526.1| 3664|Homo sapiens SMART/HDAC1 associated ... 30 5.9
AF356524-1|AAK52750.1| 3664|Homo sapiens nuclear receptor transc... 30 5.9
BC080195-1|AAH80195.1| 881|Homo sapiens Rho GTPase activating p... 30 7.8
AL833975-1|CAD38819.1| 414|Homo sapiens hypothetical protein pr... 30 7.8
AK125358-1|BAC86144.1| 608|Homo sapiens protein ( Homo sapiens ... 30 7.8
AK027567-1|BAB55203.1| 803|Homo sapiens protein ( Homo sapiens ... 30 7.8
AK023281-1|BAB14506.1| 726|Homo sapiens protein ( Homo sapiens ... 30 7.8
AJ306731-1|CAC37948.1| 803|Homo sapiens RhoGAP protein protein. 30 7.8
>BC017359-1|AAH17359.1| 394|Homo sapiens SFRS11 protein protein.
Length = 394
Score = 32.3 bits (70), Expect = 1.5
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +2
Query: 425 PSSESTFRRTGTAGSALATNNHNSRRPLRQLNHSNKRPPHRLNRPRRTANTSSKPRYHST 604
P S ST RR+ +A S ++ RR + + S R P + P+R + S PR H
Sbjct: 327 PKSYSTARRSRSASSLHICDSRERRR---RRSRSGTRSPKKPRSPKRKLSRSPSPRRHKK 383
Query: 605 DSE 613
+ +
Sbjct: 384 EKK 386
>AL353771-4|CAI22333.1| 389|Homo sapiens splicing factor,
arginine/serine-rich 11 protein.
Length = 389
Score = 32.3 bits (70), Expect = 1.5
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +2
Query: 425 PSSESTFRRTGTAGSALATNNHNSRRPLRQLNHSNKRPPHRLNRPRRTANTSSKPRYHST 604
P S ST RR+ +A S ++ RR + + S R P + P+R + S PR H
Sbjct: 327 PKSYSTARRSRSASSLHICDSRERRR---RRSRSGTRSPKKPRSPKRKLSRSPSPRRHKK 383
Query: 605 DSE 613
+ +
Sbjct: 384 EKK 386
>AL450998-13|CAH70861.1| 373|Homo sapiens SMART/HDAC1 associated
repressor protein (SHARP) protein.
Length = 373
Score = 30.3 bits (65), Expect = 5.9
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = +2
Query: 479 TNNHNSRRPLRQLNHSNKRPPH----RLNRPRRTANTSSKP 589
T RRP R HS R PH R P+R A+ +S+P
Sbjct: 184 TREVRGRRPERNYQHSRSRSPHSSQSRNQSPQRLASQASRP 224
>AL450998-10|CAH70858.1| 3664|Homo sapiens SMART/HDAC1 associated
repressor protein (SHARP) protein.
Length = 3664
Score = 30.3 bits (65), Expect = 5.9
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = +2
Query: 479 TNNHNSRRPLRQLNHSNKRPPH----RLNRPRRTANTSSKP 589
T RRP R HS R PH R P+R A+ +S+P
Sbjct: 225 TREVRGRRPERNYQHSRSRSPHSSQSRNQSPQRLASQASRP 265
>AL034555-5|CAI19527.1| 373|Homo sapiens SMART/HDAC1 associated
repressor protein (SHARP) protein.
Length = 373
Score = 30.3 bits (65), Expect = 5.9
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = +2
Query: 479 TNNHNSRRPLRQLNHSNKRPPH----RLNRPRRTANTSSKP 589
T RRP R HS R PH R P+R A+ +S+P
Sbjct: 184 TREVRGRRPERNYQHSRSRSPHSSQSRNQSPQRLASQASRP 224
>AL034555-4|CAI19526.1| 3664|Homo sapiens SMART/HDAC1 associated
repressor protein (SHARP) protein.
Length = 3664
Score = 30.3 bits (65), Expect = 5.9
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = +2
Query: 479 TNNHNSRRPLRQLNHSNKRPPH----RLNRPRRTANTSSKP 589
T RRP R HS R PH R P+R A+ +S+P
Sbjct: 225 TREVRGRRPERNYQHSRSRSPHSSQSRNQSPQRLASQASRP 265
>AF356524-1|AAK52750.1| 3664|Homo sapiens nuclear receptor
transcription cofactor protein.
Length = 3664
Score = 30.3 bits (65), Expect = 5.9
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = +2
Query: 479 TNNHNSRRPLRQLNHSNKRPPH----RLNRPRRTANTSSKP 589
T RRP R HS R PH R P+R A+ +S+P
Sbjct: 225 TREVRGRRPERNYQHSRSRSPHSSQSRNQSPQRLASQASRP 265
>BC080195-1|AAH80195.1| 881|Homo sapiens Rho GTPase activating
protein 17 protein.
Length = 881
Score = 29.9 bits (64), Expect = 7.8
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -3
Query: 250 PPPQTETPSQKQAVKGHSGTLVL*QAGINPPVDIPNITTP 131
PP Q PSQ A + +S +L QA +PP P TP
Sbjct: 685 PPGQPSAPSQLSAPRRYSSSLSPIQAPNHPPPQPPTQATP 724
>AL833975-1|CAD38819.1| 414|Homo sapiens hypothetical protein
protein.
Length = 414
Score = 29.9 bits (64), Expect = 7.8
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -3
Query: 250 PPPQTETPSQKQAVKGHSGTLVL*QAGINPPVDIPNITTP 131
PP Q PSQ A + +S +L QA +PP P TP
Sbjct: 218 PPGQPSAPSQLSAPRRYSSSLSPIQAPNHPPPQPPTQATP 257
>AK125358-1|BAC86144.1| 608|Homo sapiens protein ( Homo sapiens
cDNA FLJ43368 fis, clone NT2RP8000483, moderately
similar to Rattus norvegicus mRNA for Nadrin E2. ).
Length = 608
Score = 29.9 bits (64), Expect = 7.8
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -3
Query: 250 PPPQTETPSQKQAVKGHSGTLVL*QAGINPPVDIPNITTP 131
PP Q PSQ A + +S +L QA +PP P TP
Sbjct: 412 PPGQPSAPSQLSAPRRYSSSLSPIQAPNHPPPQPPTQATP 451
>AK027567-1|BAB55203.1| 803|Homo sapiens protein ( Homo sapiens
cDNA FLJ14661 fis, clone NT2RP2002710, weakly similar to
SH3-BINDING PROTEIN 3BP-1. ).
Length = 803
Score = 29.9 bits (64), Expect = 7.8
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -3
Query: 250 PPPQTETPSQKQAVKGHSGTLVL*QAGINPPVDIPNITTP 131
PP Q PSQ A + +S +L QA +PP P TP
Sbjct: 607 PPGQPSAPSQLSAPRRYSSSLSPIQAPNHPPPQPPTQATP 646
>AK023281-1|BAB14506.1| 726|Homo sapiens protein ( Homo sapiens
cDNA FLJ13219 fis, clone NT2RP4001849, weakly similar to
SH3-BINDING PROTEIN 3BP-1. ).
Length = 726
Score = 29.9 bits (64), Expect = 7.8
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -3
Query: 250 PPPQTETPSQKQAVKGHSGTLVL*QAGINPPVDIPNITTP 131
PP Q PSQ A + +S +L QA +PP P TP
Sbjct: 530 PPGQPSAPSQLSAPRRYSSSLSPIQAPNHPPPQPPTQATP 569
>AJ306731-1|CAC37948.1| 803|Homo sapiens RhoGAP protein protein.
Length = 803
Score = 29.9 bits (64), Expect = 7.8
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -3
Query: 250 PPPQTETPSQKQAVKGHSGTLVL*QAGINPPVDIPNITTP 131
PP Q PSQ A + +S +L QA +PP P TP
Sbjct: 607 PPGQPSAPSQLSAPRRYSSSLSPIQAPNHPPPQPPTQATP 646
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,227,582
Number of Sequences: 237096
Number of extensions: 1095340
Number of successful extensions: 3518
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3518
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6916500330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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