Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28h24
         (633 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-3057|AAN11668.1| 2133|Drosophila melanogaster CG14073-P...    31   1.3  
AF425651-1|AAL65911.1| 4001|Drosophila melanogaster multiple ank...    28   9.1  
AE014297-3507|AAO41601.1| 4001|Drosophila melanogaster CG33106-P...    28   9.1  
AE014297-3506|AAO41600.1| 4001|Drosophila melanogaster CG33106-P...    28   9.1  
AE014298-2906|AAF48996.2| 2111|Drosophila melanogaster CG14215-P...    26   9.4  
AY058601-1|AAL13830.1| 1148|Drosophila melanogaster LD29239p pro...    26   9.9  

>AE014296-3057|AAN11668.1| 2133|Drosophila melanogaster CG14073-PB,
           isoform B protein.
          Length = 2133

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 277 LARSTRPSLPPPQTETPSQKQAVKGHSGT 191
           ++RST+P LPPP   + +Q     G SG+
Sbjct: 122 MSRSTQPGLPPPHPHSSAQGSGAAGTSGS 150


>AF425651-1|AAL65911.1| 4001|Drosophila melanogaster multiple
           ankyrin repeat singleKH domain protein protein.
          Length = 4001

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 425 PSSESTFRRTGTAGSALATNNHNSRR-PLRQLNHSNKR 535
           P + +T +    +GS    NN+N+ + P RQLNH+  R
Sbjct: 30  PKAPATSKNNTGSGSGSNNNNNNTNQNPNRQLNHNLPR 67


>AE014297-3507|AAO41601.1| 4001|Drosophila melanogaster CG33106-PB,
           isoform B protein.
          Length = 4001

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 425 PSSESTFRRTGTAGSALATNNHNSRR-PLRQLNHSNKR 535
           P + +T +    +GS    NN+N+ + P RQLNH+  R
Sbjct: 30  PKAPATSKNNTGSGSGSNNNNNNTNQNPNRQLNHNLPR 67


>AE014297-3506|AAO41600.1| 4001|Drosophila melanogaster CG33106-PA,
           isoform A protein.
          Length = 4001

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 425 PSSESTFRRTGTAGSALATNNHNSRR-PLRQLNHSNKR 535
           P + +T +    +GS    NN+N+ + P RQLNH+  R
Sbjct: 30  PKAPATSKNNTGSGSGSNNNNNNTNQNPNRQLNHNLPR 67


>AE014298-2906|AAF48996.2| 2111|Drosophila melanogaster CG14215-PA
            protein.
          Length = 2111

 Score = 25.8 bits (54), Expect(2) = 9.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 274  ARSTRPSLPPPQTETPSQKQAVKGHS 197
            AR  R +   P T +PS +++++GHS
Sbjct: 1968 ARGKRATSQAPPTASPSVRRSLRGHS 1993



 Score = 20.6 bits (41), Expect(2) = 9.4
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 169  INPPVDIPNITTP 131
            I+ P+D+P+ T P
Sbjct: 2034 IDAPIDVPDSTAP 2046


>AY058601-1|AAL13830.1| 1148|Drosophila melanogaster LD29239p protein.
          Length = 1148

 Score = 25.8 bits (54), Expect(2) = 9.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 274  ARSTRPSLPPPQTETPSQKQAVKGHS 197
            AR  R +   P T +PS +++++GHS
Sbjct: 1005 ARGKRATSQAPPTASPSVRRSLRGHS 1030



 Score = 20.6 bits (41), Expect(2) = 9.9
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 169  INPPVDIPNITTP 131
            I+ P+D+P+ T P
Sbjct: 1071 IDAPIDVPDSTAP 1083


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,924,539
Number of Sequences: 53049
Number of extensions: 369939
Number of successful extensions: 1824
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1824
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2641708800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)