Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28h24
         (633 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032627-7|CAD56256.1|  306|Caenorhabditis elegans Hypothetical ...    32   0.39 
AL032627-6|CAD56255.1|  331|Caenorhabditis elegans Hypothetical ...    32   0.39 
AL032627-5|CAD45607.2|  314|Caenorhabditis elegans Hypothetical ...    32   0.39 
AL032627-4|CAB54382.2|  327|Caenorhabditis elegans Hypothetical ...    32   0.39 
AL032627-3|CAB54381.2|  325|Caenorhabditis elegans Hypothetical ...    32   0.39 
AB081596-1|BAC19843.1|  325|Caenorhabditis elegans cyclic AMP-re...    32   0.39 
AB081595-1|BAC19842.1|  306|Caenorhabditis elegans cyclic AMP-re...    32   0.39 
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z81135-4|CAB03457.1|  500|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AL032634-4|CAA21599.1|  500|Caenorhabditis elegans Hypothetical ...    29   3.7  
AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical ...    28   4.8  
Z66494-2|CAA91257.1|  821|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U64857-15|AAC25858.1|  470|Caenorhabditis elegans Hypothetical p...    27   8.4  

>AL032627-7|CAD56256.1|  306|Caenorhabditis elegans Hypothetical
           protein Y41C4A.4e protein.
          Length = 306

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -3

Query: 256 SLPPPQTETPSQKQAVKGHSGTLVL*QAGINPPVDIPNITTP 131
           S+ PP + TPSQ+Q+V+   GT  L  + + P + I  ++ P
Sbjct: 161 SVQPPTSSTPSQQQSVQSLEGTSGLIGSAMKPMLGIDAVSFP 202


>AL032627-6|CAD56255.1|  331|Caenorhabditis elegans Hypothetical
           protein Y41C4A.4d protein.
          Length = 331

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -3

Query: 256 SLPPPQTETPSQKQAVKGHSGTLVL*QAGINPPVDIPNITTP 131
           S+ PP + TPSQ+Q+V+   GT  L  + + P + I  ++ P
Sbjct: 186 SVQPPTSSTPSQQQSVQSLEGTSGLIGSAMKPMLGIDAVSFP 227


>AL032627-5|CAD45607.2|  314|Caenorhabditis elegans Hypothetical
           protein Y41C4A.4c protein.
          Length = 314

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -3

Query: 256 SLPPPQTETPSQKQAVKGHSGTLVL*QAGINPPVDIPNITTP 131
           S+ PP + TPSQ+Q+V+   GT  L  + + P + I  ++ P
Sbjct: 169 SVQPPTSSTPSQQQSVQSLEGTSGLIGSAMKPMLGIDAVSFP 210


>AL032627-4|CAB54382.2|  327|Caenorhabditis elegans Hypothetical
           protein Y41C4A.4b protein.
          Length = 327

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -3

Query: 256 SLPPPQTETPSQKQAVKGHSGTLVL*QAGINPPVDIPNITTP 131
           S+ PP + TPSQ+Q+V+   GT  L  + + P + I  ++ P
Sbjct: 182 SVQPPTSSTPSQQQSVQSLEGTSGLIGSAMKPMLGIDAVSFP 223


>AL032627-3|CAB54381.2|  325|Caenorhabditis elegans Hypothetical
           protein Y41C4A.4a protein.
          Length = 325

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -3

Query: 256 SLPPPQTETPSQKQAVKGHSGTLVL*QAGINPPVDIPNITTP 131
           S+ PP + TPSQ+Q+V+   GT  L  + + P + I  ++ P
Sbjct: 180 SVQPPTSSTPSQQQSVQSLEGTSGLIGSAMKPMLGIDAVSFP 221


>AB081596-1|BAC19843.1|  325|Caenorhabditis elegans cyclic
           AMP-response element bindingprotein 1 gamma 2 protein.
          Length = 325

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -3

Query: 256 SLPPPQTETPSQKQAVKGHSGTLVL*QAGINPPVDIPNITTP 131
           S+ PP + TPSQ+Q+V+   GT  L  + + P + I  ++ P
Sbjct: 180 SVQPPTSSTPSQQQSVQSLEGTSGLIGSAMKPMLGIDAVSFP 221


>AB081595-1|BAC19842.1|  306|Caenorhabditis elegans cyclic
           AMP-response element bindingprotein 1 beta protein.
          Length = 306

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -3

Query: 256 SLPPPQTETPSQKQAVKGHSGTLVL*QAGINPPVDIPNITTP 131
           S+ PP + TPSQ+Q+V+   GT  L  + + P + I  ++ P
Sbjct: 161 SVQPPTSSTPSQQQSVQSLEGTSGLIGSAMKPMLGIDAVSFP 202


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = +2

Query: 425 PSSESTFRRTGTAGSALATNNHNSRRPLRQLNHSNKRPPHRLNRPRRTANTSSKPRYHST 604
           P S +   R       L  +N   ++P +    S+  PP  L+   +  ++SS PR+H  
Sbjct: 729 PMSGTVADRANKFRQQLQADNEKGKKPWQHPFMSSNVPPSSLSAREQLFSSSSLPRHHRN 788

Query: 605 DS 610
            S
Sbjct: 789 SS 790


>Z81135-4|CAB03457.1|  500|Caenorhabditis elegans Hypothetical
           protein W01G7.5 protein.
          Length = 500

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = +2

Query: 428 SSESTFRRTGTAGSALATNNHNSRRPLRQLNHSNKRPPHRLNRPRRTANTSSKPRYHST 604
           S +S+FR   +  S++      S  P ++L+   K  P   N PR T ++SSK   ++T
Sbjct: 127 SKQSSFRSANSTASSVGRGRPVSSTPNKRLSPVYKPSPVPKNTPRTT-SSSSKTTINTT 184


>AL032634-4|CAA21599.1|  500|Caenorhabditis elegans Hypothetical
           protein W01G7.5 protein.
          Length = 500

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = +2

Query: 428 SSESTFRRTGTAGSALATNNHNSRRPLRQLNHSNKRPPHRLNRPRRTANTSSKPRYHST 604
           S +S+FR   +  S++      S  P ++L+   K  P   N PR T ++SSK   ++T
Sbjct: 127 SKQSSFRSANSTASSVGRGRPVSSTPNKRLSPVYKPSPVPKNTPRTT-SSSSKTTINTT 184


>AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical
           protein Y76B12C.2 protein.
          Length = 1119

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 539 PHRLNRPRRTANTSSKPRYHSTDSETQ 619
           P+R++RPRR+  T+ K  Y  +D + +
Sbjct: 207 PNRISRPRRSVTTAKKVSYVPSDDQLE 233


>Z66494-2|CAA91257.1|  821|Caenorhabditis elegans Hypothetical
           protein C34C6.2 protein.
          Length = 821

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/63 (23%), Positives = 28/63 (44%)
 Frame = +2

Query: 428 SSESTFRRTGTAGSALATNNHNSRRPLRQLNHSNKRPPHRLNRPRRTANTSSKPRYHSTD 607
           +S  T   TGT+ +   ++     + +  +N  ++ P HR      + N S++ RY    
Sbjct: 506 ASGKTSTATGTSSTHTISSEIRRDQRIMSVNDRSRDPSHRTVSVTDSVNISNQSRYSEQT 565

Query: 608 SET 616
           S T
Sbjct: 566 SST 568


>U64857-15|AAC25858.1|  470|Caenorhabditis elegans Hypothetical
           protein C37C3.1 protein.
          Length = 470

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +2

Query: 431 SESTFRRTGTAGSALATNNHNSRRPLRQ-LNHSNKRPPHRLNRPRRTANTSSKPRYHST 604
           SEST RR     S   + +   +RP+R+  + S  R P+R N  R  + T S+ +  ST
Sbjct: 335 SESTSRRRSGRHSRSRSRSPPRKRPVRRSRSRSRSRTPNR-NWTRARSRTRSQAKSSST 392


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,730,254
Number of Sequences: 27780
Number of extensions: 171598
Number of successful extensions: 661
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)