Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28h20
         (361 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...    27   0.88 
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    26   2.0  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    25   3.5  
SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces ...    24   8.2  

>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 27.1 bits (57), Expect = 0.88
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 143 KYVLNILFQIVVNFEKKFSPYTNKICTLY 57
           KY  N+ F I+ N+  K SP     CT +
Sbjct: 146 KYTKNVRFCIICNYINKISPAIQSRCTRF 174


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -1

Query: 307 YFYIYNNFVVHKWLDVSFEIKINYIN---YISITRL*KHSYITIIIHRLTFTIT 155
           +F++  + +   WL  +F IK NYI    Y   T +  H Y+     +LT T+T
Sbjct: 416 FFWVIGSELFVDWLKHAFIIKFNYIKPSIYSRFTDVLCHDYVASGA-QLTQTVT 468


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 13/54 (24%), Positives = 29/54 (53%)
 Frame = -1

Query: 196 YITIIIHRLTFTITRYLLNMY*TFYFKL*STLKKNSVLILIKYAPYILLCSFIV 35
           Y  I +HRL+FT+   + +++  F   L +T  + ++ I     P+ ++  F++
Sbjct: 89  YSVIAVHRLSFTLV--MFHLFLAFILSLCNTRSRVAIKIQNGLWPFKIVLWFVL 140


>SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 307

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 253 QKKHLTTY-VPQNCYRCKNI*FVLMLN 330
           +KK  T +  P  CYRC N+  +L ++
Sbjct: 248 EKKLSTVWSAPNYCYRCANLASILQID 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,355,884
Number of Sequences: 5004
Number of extensions: 23751
Number of successful extensions: 56
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)