Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28h20
         (361 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80030-2|AAG24161.2|  362|Caenorhabditis elegans Serpentine rece...    27   5.2  
Z77661-10|CAB01181.2|  340|Caenorhabditis elegans Hypothetical p...    26   6.9  
U80030-4|AAG24162.2|  370|Caenorhabditis elegans Serpentine rece...    26   6.9  

>U80030-2|AAG24161.2|  362|Caenorhabditis elegans Serpentine
           receptor, class w protein121 protein.
          Length = 362

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 104 FEKKFSPYTNKICTLYTSLFFYSNIIN 24
           FEK F P++NKI      +   S IIN
Sbjct: 27  FEKTFYPFSNKILAFVNEISISSVIIN 53


>Z77661-10|CAB01181.2|  340|Caenorhabditis elegans Hypothetical
           protein F40G12.8 protein.
          Length = 340

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = -3

Query: 137 VLNILF--QIVVNFEKK-FSPYTNKICTLYTSLFFYSNIIN*II 15
           ++NIL+    +V FEKK FS    KI  L  S+ F S I+N II
Sbjct: 49  LINILYIPVFLVMFEKKQFSMSCYKIMALLASVDFGSIIVNCII 92


>U80030-4|AAG24162.2|  370|Caenorhabditis elegans Serpentine
           receptor, class w protein120 protein.
          Length = 370

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 107 NFEKKFSPYTNKICTLYTSLFFYSNIIN 24
           NFE+KF P+  KI +  + +   S +IN
Sbjct: 26  NFEEKFIPFAQKILSYSSEISISSVLIN 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,298,494
Number of Sequences: 27780
Number of extensions: 129546
Number of successful extensions: 227
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)