Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28h20
         (361 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   2.5  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   5.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    20   7.7  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = +3

Query: 6   SNHNNLINNV 35
           ++HNNL+NNV
Sbjct: 399 ASHNNLLNNV 408


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 193 ITIIIHRLTFTITRYLL 143
           + +++H LT TIT  LL
Sbjct: 126 VALLLHMLTTTITLTLL 142


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = -2

Query: 327 QHQNKSYIFTSITILWYIS 271
           +H+N   ++ +I ++W IS
Sbjct: 296 KHKNNRRVWLTILLVWAIS 314


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,070
Number of Sequences: 438
Number of extensions: 1798
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)