Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28h18
(241 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces po... 25 1.0
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 25 1.3
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 24 2.3
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 24 3.1
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 23 5.4
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c... 23 7.1
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 23 7.1
SPBC18H10.15 |ppk23||serine/threonine protein kinase Ppk23|Schiz... 23 7.1
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 23 7.1
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 23 7.1
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe... 22 9.4
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 22 9.4
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 22 9.4
>SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 450
Score = 25.4 bits (53), Expect = 1.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 137 TVESQTRAGDEIASFLRYC 81
T+E +AG +I SFL YC
Sbjct: 136 TIEEVHKAGGKIKSFLSYC 154
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 25.0 bits (52), Expect = 1.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 239 FFLNDKVIYLQNSNKNKLFELSGL 168
F +V+YL ++NK + FELS +
Sbjct: 374 FLQQSRVLYLFHANKQRHFELSDI 397
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 24.2 bits (50), Expect = 2.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 197 KNKLFELSGLSLKSCRHDFVTVESQTRAGDEIASF 93
KNKL + S + L SC + S TR + +S+
Sbjct: 78 KNKLSKESAIQLSSCIRKTLLAPSSTRVPSKNSSY 112
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 23.8 bits (49), Expect = 3.1
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +3
Query: 30 PKLQNTLLLTARHSTHPTVAK-ERSDFVACP 119
P++QNT H THP + SDF + P
Sbjct: 286 PQMQNTTSQPTTHDTHPPKQQGPISDFRSIP 316
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 23.0 bits (47), Expect = 5.4
Identities = 7/25 (28%), Positives = 14/25 (56%)
Frame = -2
Query: 108 RNRFVPSLLSDVWNVWLLIVACSVT 34
+N P L W ++L++ C++T
Sbjct: 824 KNDNFPEFLLVQWKLYLIVACCTIT 848
>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 581
Score = 22.6 bits (46), Expect = 7.1
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +3
Query: 9 EPFIDKPPKLQNTLLLTARHSTHPTVAK-ERSDFVACPRLAFD 134
E F+D+ P+ + LLT ST T++ E ++ + ++++D
Sbjct: 519 EKFLDERPEETDNYLLTL-ESTEDTISSYEETEGIPVKKVSYD 560
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 22.6 bits (46), Expect = 7.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 147 RFCNSRKPNEGRRRNRFVPSLLSDV 73
R C + EGR+ NRF S+L V
Sbjct: 33 RTCLASLTPEGRKNNRFNTSVLLQV 57
>SPBC18H10.15 |ppk23||serine/threonine protein kinase
Ppk23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 398
Score = 22.6 bits (46), Expect = 7.1
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = +3
Query: 39 QNTLLLTARHSTHPTVAKERSDFVACPRLAFDCYKIVSARF*TKPAK 179
Q LL A HPTV + P L + Y +++ PAK
Sbjct: 300 QYFLLPYANKIKHPTVPTHSKIRTSIPNLTGNAYDLLNRLLSLNPAK 346
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1328
Score = 22.6 bits (46), Expect = 7.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -3
Query: 239 FFLNDKVIYLQNSNK 195
F L D+V+Y+Q+S K
Sbjct: 1135 FALGDRVVYVQDSGK 1149
>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 230
Score = 22.6 bits (46), Expect = 7.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 11 AVH*QAAEVTEHATINSQTFHTS 79
++H Q + VTE+ TI T+ T+
Sbjct: 111 SIHQQVSVVTEYVTIQPTTYVTT 133
>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 22.2 bits (45), Expect = 9.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -1
Query: 94 SFATVGCVECLAVNSSVFCNF 32
SF VGC+E ++ S C F
Sbjct: 103 SFDRVGCMELAFISFSAACYF 123
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 22.2 bits (45), Expect = 9.4
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 99 SDFVACPRLAFDCYKIVS 152
+ FVA P L DC KI S
Sbjct: 230 ASFVASPLLLEDCNKIAS 247
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 22.2 bits (45), Expect = 9.4
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Frame = -3
Query: 200 NKNKLFELSGLSLKS---CRHDFVTVE 129
NKNK+ ELS + KS DF T+E
Sbjct: 550 NKNKILELSKKTAKSKVWNLDDFFTIE 576
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 896,228
Number of Sequences: 5004
Number of extensions: 13702
Number of successful extensions: 48
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 41344840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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