Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28h18
         (241 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0394 - 17261008-17262476,17262554-17262743                       29   0.69 
01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962     28   0.92 
12_01_0827 - 7662180-7662192,7662451-7662764                           27   1.6  
07_01_1179 + 11184521-11184536,11184593-11184691,11184790-111848...    26   4.9  
05_01_0167 - 1153778-1153927,1154006-1154797,1155602-1156408,115...    26   4.9  
09_06_0234 - 21747724-21747839,21748027-21748096,21749157-217492...    25   6.5  
10_08_1032 - 22432739-22433218,22433231-22433848                       25   8.5  
04_03_0658 + 18447986-18448117,18448204-18448317,18448388-184485...    25   8.5  

>09_04_0394 - 17261008-17262476,17262554-17262743
          Length = 552

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -2

Query: 129 KPNEGRRRNRFVPSLLSDVWNVWLLIVAC 43
           KP    RR   +PS  S VW V LL+V C
Sbjct: 4   KPTRPHRRPPPLPSKTSGVWPVALLVVLC 32


>01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962
          Length = 774

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 32  EVTEHATINSQTFHTSDSSEGTKRFRRLPSF 124
           +++EH T  S+  HT  S+   ++ RRL SF
Sbjct: 696 KISEHDTDKSRRPHTKKSATSPRKMRRLSSF 726


>12_01_0827 - 7662180-7662192,7662451-7662764
          Length = 108

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +3

Query: 30  PKLQNTLLLTARH--STHPTVAKERSDFVACPR 122
           PK Q T++ +AR   +T   + ++RSD  ACPR
Sbjct: 25  PKTQQTVVPSARGPTATDQVLPRQRSDRSACPR 57


>07_01_1179 +
           11184521-11184536,11184593-11184691,11184790-11184852,
           11185011-11185084,11185187-11185261,11185371-11185514,
           11185629-11185733,11185839-11186276,11187102-11188241,
           11188320-11188493
          Length = 775

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +3

Query: 66  HSTHPTVAKERSDFVACPRLAFDCYKIVSARF*TKP 173
           HS   T  K   + +   R+ F CYK V A   TKP
Sbjct: 281 HSARTTSKKRNREVI---RVTFKCYKYVKADCNTKP 313


>05_01_0167 -
           1153778-1153927,1154006-1154797,1155602-1156408,
           1156514-1156618,1156985-1157059,1157160-1157233,
           1157388-1157450,1157549-1157647,1157704-1157811,
           1157908-1157973,1158073-1158150,1158257-1158304,
           1158381-1158440,1158527-1158610,1158902-1158949,
           1159049-1159096,1161462-1161579
          Length = 940

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +3

Query: 66  HSTHPTVAKERSDFVACPRLAFDCYKIVSARF*TKP 173
           HS   T  K   + +   R+ F CYK V A   TKP
Sbjct: 447 HSARTTSKKRNREVI---RVTFKCYKYVKADCNTKP 479


>09_06_0234 -
           21747724-21747839,21748027-21748096,21749157-21749294,
           21749389-21749493,21750157-21750527,21750612-21750694,
           21750803-21751063,21751425-21751606,21752539-21752649,
           21752727-21752798,21752883-21753036,21753329-21753341,
           21754015-21754084,21754409-21754485,21754582-21754640,
           21755327-21755580
          Length = 711

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 21  DKPPKLQNTLLLTARHSTHPTVAKERSDFVACPRLAF 131
           D  PKL    LLT R+ST   VA  +  F++   L F
Sbjct: 317 DLEPKLIVVSLLTVRNSTDENVASVKEGFLSGLALHF 353


>10_08_1032 - 22432739-22433218,22433231-22433848
          Length = 365

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -3

Query: 146 DFVTVESQTRAGDEIASFLRYC 81
           DF TVES   A   I S LR+C
Sbjct: 114 DFKTVESYNSAVHRIVSKLRFC 135


>04_03_0658 +
           18447986-18448117,18448204-18448317,18448388-18448507,
           18448589-18449215,18449289-18449462,18449545-18449809,
           18449889-18449959,18450043-18450145,18450221-18450280,
           18450533-18450744,18450830-18450901,18451446-18451502,
           18451598-18451882,18452359-18452371,18452396-18452463,
           18452649-18452747,18452836-18452967,18453038-18453141,
           18453234-18453423,18453519-18453524
          Length = 967

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 79  GCVECLAVNSSVFCNFG 29
           GC  CLAVN   + NFG
Sbjct: 325 GCFYCLAVNYLDYVNFG 341


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,608,707
Number of Sequences: 37544
Number of extensions: 83573
Number of successful extensions: 306
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 14,793,348
effective HSP length: 58
effective length of database: 12,615,796
effective search space used: 264931716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)