Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28h18
(241 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical pr... 28 0.77
U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical pr... 28 0.77
Z73977-2|CAA98291.2| 349|Caenorhabditis elegans Hypothetical pr... 26 3.1
Z73968-1|CAA98230.2| 349|Caenorhabditis elegans Hypothetical pr... 26 3.1
Z82278-8|CAB05251.2| 312|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z50109-5|CAA90438.1| 325|Caenorhabditis elegans Hypothetical pr... 26 4.1
AF106576-1|AAC78177.2| 664|Caenorhabditis elegans Hypothetical ... 26 4.1
AF016416-7|AAB65272.2| 307|Caenorhabditis elegans Hypothetical ... 26 4.1
U00036-2|AAK29859.1| 592|Caenorhabditis elegans Dumpy : shorter... 25 5.4
U97002-1|AAY86260.1| 181|Caenorhabditis elegans Hypothetical pr... 25 7.2
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 25 9.5
U42436-9|AAF99893.1| 109|Caenorhabditis elegans Hypothetical pr... 25 9.5
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 25 9.5
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 25 9.5
AC006695-17|AAF39983.2| 327|Caenorhabditis elegans Hypothetical... 25 9.5
>U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical
protein F46F11.9b protein.
Length = 1282
Score = 28.3 bits (60), Expect = 0.77
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 69 STHPTVAKERSDFVACPRLAFDCYKIVSARF 161
S H +A R A P L+FDCY++ F
Sbjct: 516 SFHRVLAANRFSNAAIPALSFDCYRLALPAF 546
>U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical
protein F46F11.9a protein.
Length = 1280
Score = 28.3 bits (60), Expect = 0.77
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 69 STHPTVAKERSDFVACPRLAFDCYKIVSARF 161
S H +A R A P L+FDCY++ F
Sbjct: 514 SFHRVLAANRFSNAAIPALSFDCYRLALPAF 544
>Z73977-2|CAA98291.2| 349|Caenorhabditis elegans Hypothetical
protein C05A2.1 protein.
Length = 349
Score = 26.2 bits (55), Expect = 3.1
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Frame = -1
Query: 229 MIKLFIYKTVIKINYLSLAGL--V*NLADTIL*QSKAKRGQATKSLRSFATV-GCVECLA 59
++ L YK N+ L G V NL + KR + K + F V C+ A
Sbjct: 109 IVLLLCYKIKYPNNFFLLRGNHEVANLNRIYGFYDECKRRYSVKLWKCFQDVFNCMPVAA 168
Query: 58 -VNSSVFCNFGGLSMN 14
+++ +FC GGLS N
Sbjct: 169 LIDNKIFCCHGGLSPN 184
>Z73968-1|CAA98230.2| 349|Caenorhabditis elegans Hypothetical
protein C05A2.1 protein.
Length = 349
Score = 26.2 bits (55), Expect = 3.1
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Frame = -1
Query: 229 MIKLFIYKTVIKINYLSLAGL--V*NLADTIL*QSKAKRGQATKSLRSFATV-GCVECLA 59
++ L YK N+ L G V NL + KR + K + F V C+ A
Sbjct: 109 IVLLLCYKIKYPNNFFLLRGNHEVANLNRIYGFYDECKRRYSVKLWKCFQDVFNCMPVAA 168
Query: 58 -VNSSVFCNFGGLSMN 14
+++ +FC GGLS N
Sbjct: 169 LIDNKIFCCHGGLSPN 184
>Z82278-8|CAB05251.2| 312|Caenorhabditis elegans Hypothetical
protein M162.8 protein.
Length = 312
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +3
Query: 39 QNTLLLTARHSTHPTVAKERSDFVACPRLAFDCYKIVSARF 161
+N +L+ ++ + + DF+A P+L D ++I +A F
Sbjct: 99 KNPVLMRISRNSLNEILRVLEDFLAIPKLEIDHFRIKAAMF 139
>Z50109-5|CAA90438.1| 325|Caenorhabditis elegans Hypothetical
protein C09H10.7 protein.
Length = 325
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -2
Query: 150 TRFCNSRKPNEGRRRNRFVPSLLSDVWNVWLLIVACSVTS 31
T F +S PN R F P+L S NV +++ + S
Sbjct: 246 TMFASSLAPNSAGRTTHFDPTLNSPAENVLSEVISSEIDS 285
>AF106576-1|AAC78177.2| 664|Caenorhabditis elegans Hypothetical
protein W07E6.1 protein.
Length = 664
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 97 RSFATVGCVECLAVNSSVFCNFGG 26
R A +G + L VN++V CN GG
Sbjct: 342 RCRAIIGNLHRLGVNNTVVCNLGG 365
>AF016416-7|AAB65272.2| 307|Caenorhabditis elegans Hypothetical
protein F29A7.2 protein.
Length = 307
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 62 QTFHTSDSSEGTKRFRRLPSFGFRLLQNRVCKILN 166
++ TSDS G KR FGFR + + ++ N
Sbjct: 78 ESVQTSDSEHGIKRVWLKEGFGFRDWIDHILEVFN 112
>U00036-2|AAK29859.1| 592|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 31, isoform a protein.
Length = 592
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -2
Query: 108 RNRFVPSLLSDVWNVWLLIVACSVTSAAC 22
R R VP + WN W ACS T AC
Sbjct: 483 RARAVPE--AGNWNSWSPWTACSATCGAC 509
>U97002-1|AAY86260.1| 181|Caenorhabditis elegans Hypothetical
protein K09H11.9 protein.
Length = 181
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 149 HDFVTVESQTRAGDEIASFLR 87
H FV ESQ +++ASFLR
Sbjct: 126 HKFVQPESQDYLAEQMASFLR 146
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1
Query: 118 GQATKSLRSFATVGCVECLAVNSSVFC 38
G+ T SL S GC EC N + C
Sbjct: 1267 GEGTFSLDSSNLKGCTECFCFNRTSNC 1293
>U42436-9|AAF99893.1| 109|Caenorhabditis elegans Hypothetical
protein C49H3.3 protein.
Length = 109
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 8 GAVH*QAAEVTEHATINSQTFHTSDSS 88
G + + EVT ATIN++T D S
Sbjct: 51 GTANEEKMEVTSQATINTKTLKKKDGS 77
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1
Query: 118 GQATKSLRSFATVGCVECLAVNSSVFC 38
G+ T SL S GC EC N + C
Sbjct: 1267 GEGTFSLDSSNLKGCTECFCFNRTSNC 1293
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1
Query: 118 GQATKSLRSFATVGCVECLAVNSSVFC 38
G+ T SL S GC EC N + C
Sbjct: 1267 GEGTFSLDSSNLKGCTECFCFNRTSNC 1293
>AC006695-17|AAF39983.2| 327|Caenorhabditis elegans Hypothetical
protein W06H8.6 protein.
Length = 327
Score = 24.6 bits (51), Expect = 9.5
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = -3
Query: 212 LQNSNKNKLFELSGLSLKSCRHDFVTVESQTRAGDEIASFLRYCRMCGMS 63
L N++ +KL E + + L+ F TV++ + D++ YC + GMS
Sbjct: 100 LLNTSLSKLREEANMPLRKHLLIFHTVKTIQKDLDQLDDEELYCSLVGMS 149
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,999,944
Number of Sequences: 27780
Number of extensions: 78540
Number of successful extensions: 266
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 12,740,198
effective HSP length: 59
effective length of database: 11,101,178
effective search space used: 222023560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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