Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28h18
         (241 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    20   3.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   4.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   4.9  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    19   6.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    19   8.5  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          19   8.5  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          19   8.5  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          19   8.5  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          19   8.5  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          19   8.5  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          19   8.5  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          19   8.5  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    19   8.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          19   8.5  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.2 bits (40), Expect = 3.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 94  NEAISSPALVWLSTV 138
           + AIS PA+VW   V
Sbjct: 174 SSAISFPAIVWWRAV 188


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.8 bits (39), Expect = 4.9
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 140  VTVESQTRAGDEIASFLRYCR 78
            + V + TR GD + + + YC+
Sbjct: 1188 IQVLAFTRVGDGVPTTVTYCQ 1208


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.8 bits (39), Expect = 4.9
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 140  VTVESQTRAGDEIASFLRYCR 78
            + V + TR GD + + + YC+
Sbjct: 1184 IQVLAFTRVGDGVPTTVTYCQ 1204


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 19.4 bits (38), Expect = 6.4
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +2

Query: 38  TEHATINSQTFHTSDSSEGTKRFRRLPSFGFRLLQ 142
           TE + + ++ +H S      +RF   P F +++L+
Sbjct: 196 TELSRVGTK-YHRSGGLMNVERFPYQPPFAWKILK 229


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic
          acetylcholine receptor alpha3subunit protein.
          Length = 566

 Score = 19.0 bits (37), Expect = 8.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 90 SLLSDVWNVWLLIVACS 40
          SL+  +W V +LI  CS
Sbjct: 4  SLVGIMWIVLVLISGCS 20


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.0 bits (37), Expect = 8.5
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +2

Query: 32  EVTEHATINSQTFHTSDSSEGT 97
           E+TEH T+ +     S++   T
Sbjct: 185 EITEHRTVLAVNIEKSENETKT 206


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.0 bits (37), Expect = 8.5
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +2

Query: 32  EVTEHATINSQTFHTSDSSEGT 97
           E+TEH T+ +     S++   T
Sbjct: 185 EITEHRTVLAVNIEKSENETKT 206


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.0 bits (37), Expect = 8.5
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +2

Query: 32  EVTEHATINSQTFHTSDSSEGT 97
           E+TEH T+ +     S++   T
Sbjct: 185 EITEHRTVLAVNIEKSENETKT 206


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.0 bits (37), Expect = 8.5
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +2

Query: 32  EVTEHATINSQTFHTSDSSEGT 97
           E+TEH T+ +     S++   T
Sbjct: 185 EITEHRTVLAVNIEKSENETKT 206


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.0 bits (37), Expect = 8.5
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +2

Query: 32  EVTEHATINSQTFHTSDSSEGT 97
           E+TEH T+ +     S++   T
Sbjct: 185 EITEHRTVLAVNIEKSENETKT 206


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.0 bits (37), Expect = 8.5
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +2

Query: 32  EVTEHATINSQTFHTSDSSEGT 97
           E+TEH T+ +     S++   T
Sbjct: 185 EITEHRTVLAVNIEKSENETKT 206


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 19.0 bits (37), Expect = 8.5
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +2

Query: 32  EVTEHATINSQTFHTSDSSEGT 97
           E+TEH T+ +     S++   T
Sbjct: 185 EITEHRTVLAVNIEKSENETKT 206


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 19.0 bits (37), Expect = 8.5
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +2

Query: 32  EVTEHATINSQTFHTSDSSEGT 97
           E+TEH T+ +     S++   T
Sbjct: 185 EITEHRTVLAVNIEKSENETKT 206


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 19.0 bits (37), Expect = 8.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 53  INSQTFHTSDSSE 91
           I  +T HT DSS+
Sbjct: 331 IKFETLHTMDSSD 343


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,332
Number of Sequences: 438
Number of extensions: 1079
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4024224
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)