Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28h17
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   5.0  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    21   8.8  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 352 DPKIQQDMKHWPF 390
           DP + +D +HW F
Sbjct: 855 DPAVYEDWRHWKF 867


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 578 RWESLKYAGTVTTASRTVLP 519
           +W+S+  +GT T  +RT+ P
Sbjct: 448 QWKSILESGTTTLQTRTMHP 467


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 574 QRQATKDAGAIAGLNVLRIINEPTAAALAYG 666
           Q +A K A  +   N   II+EPT     YG
Sbjct: 353 QAEAEKHAAMLYQYNFNIIISEPTERISPYG 383


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 10  LKRNTKQTKRVQCKLKTSFSTSYLL 84
           LKRN ++ K +  +++  F   YL+
Sbjct: 30  LKRNWRKPKGIDNRVRRRFKGQYLM 54


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,254
Number of Sequences: 438
Number of extensions: 4119
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)