Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28h16
         (296 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    25   3.1  
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    24   5.5  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    23   9.6  

>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 62  KCIYFLTSMTRIKKHA 15
           K + FLTS+ RI+KHA
Sbjct: 307 KAMAFLTSVIRIRKHA 322


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 11/40 (27%), Positives = 25/40 (62%)
 Frame = -1

Query: 128 NEFQFHLEVSVITN*YKSINLCKCIYFLTSMTRIKKHARR 9
           N+F  HL   +I++  ++ + C C+    +MTR++K+ ++
Sbjct: 173 NDFLHHL-YWLISDLTRNESTCCCVLCSGNMTRVRKNLQK 211


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 98  LTPQGEIEIHFTFNVLFS*NTCKGXKIS*PL 190
           LT Q   ++ + F  LF    C+G KIS PL
Sbjct: 711 LTEQLSYDLWYIFLGLFIICICEGGKISNPL 741


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,017,365
Number of Sequences: 5004
Number of extensions: 15953
Number of successful extensions: 27
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)