Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28h16
         (296 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1182 + 11207282-11207330,11208015-11208094,11208181-112086...    27   2.0  
03_06_0642 + 35239658-35240083,35240167-35240238,35240305-352409...    25   8.0  

>07_01_1182 +
           11207282-11207330,11208015-11208094,11208181-11208645,
           11213485-11213568,11213925-11214113,11214191-11214277,
           11214343-11214969
          Length = 526

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 256 RSDFPYFYLVILNSFSGLISIWQRLTNFXTFTSILTKQNI 137
           R+   +F  +I   F G   I QR   F T T +LTK++I
Sbjct: 211 RNPSDHFLRMINKDFEGASPIPQRQATFLTKTYVLTKRSI 250


>03_06_0642 +
           35239658-35240083,35240167-35240238,35240305-35240919,
           35241253-35241435,35241604-35241663,35241733-35241936,
           35242497-35242745,35243609-35243707,35243760-35243858,
           35244463-35244480,35244668-35244862,35244981-35245073,
           35245265-35245531,35245884-35246102
          Length = 932

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 286 TPRSPFSXCSRSDFPYFY 233
           TPR+PF   SRS  PY +
Sbjct: 32  TPRAPFPSTSRSSNPYSF 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,772,528
Number of Sequences: 37544
Number of extensions: 78539
Number of successful extensions: 82
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 327448548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)