Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28h16
         (296 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97005-11|AAB52288.1|  891|Caenorhabditis elegans Hypothetical p...    28   1.0  
U97011-2|AAB52325.2|  689|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U88176-3|AAB42284.1|  210|Caenorhabditis elegans Hypothetical pr...    25   9.7  
AF100307-14|AAC68927.1|  313|Caenorhabditis elegans Hypothetical...    25   9.7  

>U97005-11|AAB52288.1|  891|Caenorhabditis elegans Hypothetical
           protein F19F10.10 protein.
          Length = 891

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 125 EFQFHLEVSVITN*YKSINLCKCIYFLTSMTRIKKHARR 9
           +FQ +     I N  KS ++C+ I +   M  I+KHA R
Sbjct: 806 QFQEYCRKFTIKNCQKSCSICQKIDYRKDMANIQKHAGR 844


>U97011-2|AAB52325.2|  689|Caenorhabditis elegans Hypothetical
           protein F31F7.2 protein.
          Length = 689

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 292 NSTPRSPFSXCSRSDFPYFYLVILNSFSGLISI 194
           N+  RS  +  +R   P   LVI NS+  LI +
Sbjct: 171 NALTRSTMNTANRKSVPDVILVISNSYQPLIEV 203


>U88176-3|AAB42284.1|  210|Caenorhabditis elegans Hypothetical
           protein F18F11.1 protein.
          Length = 210

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 216 ALVV*FLFGNG*LIFXPLQVF*LNKT 139
           ALV+ FLFG G ++   L +F L KT
Sbjct: 51  ALVMVFLFGEGTILQKLLTIFRLTKT 76


>AF100307-14|AAC68927.1|  313|Caenorhabditis elegans Hypothetical
           protein T12B5.1 protein.
          Length = 313

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -2

Query: 229 VILNSFSGLISIWQRLTNFXTFTSILTKQNIKRKMNFNFTLRCQ*LLIDTNPLIYANVF 53
           VILNSF     I  ++  F   T+I  + ++ R+  F  +        +TNP+  A VF
Sbjct: 215 VILNSFHFKSFIIHQVDEFSAQTAIQIRDDLLRRSTFQ-SCEIHFDKSETNPIEIAKVF 272


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,512,936
Number of Sequences: 27780
Number of extensions: 85517
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 302276744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)