Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28h12
         (375 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   137   6e-34
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   136   1e-33
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    26   1.7  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   1.7  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    26   1.7  
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    25   5.1  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    24   6.8  
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc...    24   9.0  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    24   9.0  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    24   9.0  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    24   9.0  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    24   9.0  
SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    24   9.0  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  137 bits (331), Expect = 6e-34
 Identities = 64/93 (68%), Positives = 74/93 (79%)
 Frame = +2

Query: 95  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 274
           ++ ARP VS+YS K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 275 HQTSAESWGTGRAVXRIPRVRGGGTHRSGQGAF 373
           HQTSAESWGTGRA+ RIPRV GGGTHRSGQ AF
Sbjct: 60  HQTSAESWGTGRALARIPRVGGGGTHRSGQAAF 92


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  136 bits (329), Expect = 1e-33
 Identities = 63/93 (67%), Positives = 74/93 (79%)
 Frame = +2

Query: 95  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 274
           ++ ARP VS+Y+ K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 275 HQTSAESWGTGRAVXRIPRVRGGGTHRSGQGAF 373
           HQTSAESWGTGRA+ RIPRV GGGTHRSGQ AF
Sbjct: 60  HQTSAESWGTGRALARIPRVGGGGTHRSGQAAF 92


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 94  SIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGP 204
           SI SP+ SVG   +  D +  S + P+ + G  +  P
Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 156 APCTVSLFSEYTDTKGRATDRLISLL 79
           A C V ++SEYT   G ++  L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +1

Query: 169 PVRVQGAHTSGPGQ*CSRFYVQELEAALLREQ 264
           PV VQG HT G      +F  Q L A +L  Q
Sbjct: 29  PVDVQGCHTLGERNDPKKFRFQTLVALMLSSQ 60


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 16  VAWRMVFITAISVYFGGIA-SLK*RNESIGSPTFSVGVF 129
           V W +VF+    ++ GG+A  LK   +S+    F V  F
Sbjct: 343 VGWGLVFVLICVIWGGGLAFQLKYTRKSVAESDFVVTDF 381


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 11/47 (23%), Positives = 20/47 (42%)
 Frame = +2

Query: 146 VQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTS 286
           +QG+  P  F  +    P+ +   H   ++    PY   K+  H+ S
Sbjct: 709 LQGSDGPRKFTIEKAGEPNKLPKAHTCFNRLDLPPYTSKKDLDHKLS 755


>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 475

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -1

Query: 213 SLTRSGRMGALNTNGRGLAAPCTVSLFSEYTDTKGRATDRL 91
           SL+ S R+GAL++  +   + C   +    T  +G + DR+
Sbjct: 325 SLSLSARIGALHSLNKKQVSLCDRFMLGGSTSLRGFSEDRI 365


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 83  SEMSLSVARPLVSVYSE 133
           SEMSL++A P+ + Y+E
Sbjct: 96  SEMSLTIALPISAAYTE 112


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -1

Query: 141 SLFSEYTDTKGRATDRLISLL*RSYTSEIYTNSGDKDHPPCHGGVKS 1
           S F EY +    +++ L SL  +SY+S  Y+      HPP + G +S
Sbjct: 656 SQFLEYANDSPNSSESLESLNNQSYSSSPYSVF---SHPPPYMGRQS 699


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 131 LNTPTLKVGLPIDSFRYFSEAIPPKYTL 48
           +N PT+  G P  S      +IPP + +
Sbjct: 235 MNNPTIPKGTPSTSIEGAKTSIPPSHAM 262


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 356 TYEYHHHGHAEFGXQH 309
           T++Y HH H   G  H
Sbjct: 19  THDYDHHNHDHHGHDH 34


>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 145 GAGCSQAPPVRVQGAHTSGPGQ*CSRFYVQELE 243
           G G S  PP  ++G   S   +   RF+ + LE
Sbjct: 131 GMGNSSRPPFDIKGQTASEKVEETERFFTESLE 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,563,291
Number of Sequences: 5004
Number of extensions: 29342
Number of successful extensions: 71
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)