Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28h12
(375 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 119 6e-28
07_01_0578 + 4295386-4296489,4297394-4297507 117 3e-27
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 34 0.042
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 33 0.073
11_01_0072 + 570345-570476,570640-570831,571095-571260,571487-57... 31 0.22
03_05_0366 - 23505755-23506441 31 0.39
08_02_0105 + 12448808-12449152,12449218-12449409,12449520-124496... 29 1.2
10_02_0199 + 6668902-6669293,6669825-6669882 29 1.6
12_02_0488 + 19587337-19587648,19587739-19587798,19587876-195879... 28 2.7
08_02_1285 - 25881091-25881798 28 2.7
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657 28 2.7
11_06_0209 + 21282079-21282369,21287029-21287137,21287462-212875... 27 3.6
03_01_0147 - 1170481-1171260,1171332-1171511 27 3.6
09_06_0153 - 21243108-21245660 27 4.8
04_04_1394 - 33213852-33214406,33214487-33214678,33214777-332148... 27 4.8
11_01_0074 + 582210-582434,582521-582712,582785-582950,584013-58... 27 6.3
05_03_0419 - 13707843-13707860,13707936-13708010,13708251-137082... 27 6.3
09_02_0384 - 8294914-8297817 26 8.4
07_03_1169 + 24501594-24502826 26 8.4
06_03_0807 - 24789843-24789859,24791536-24791613,24793589-24793709 26 8.4
02_04_0457 + 23093020-23093343,23093798-23093806 26 8.4
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 119 bits (287), Expect = 6e-28
Identities = 59/93 (63%), Positives = 67/93 (72%), Gaps = 1/93 (1%)
Frame = +2
Query: 98 SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 274
+ ARPLVSV + E A +P V +APIRPD+V H +S N RQPY VS+ AG
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAG 62
Query: 275 HQTSAESWGTGRAVXRIPRVRGGGTHRSGQGAF 373
HQTSAESWGTGRAV RIPRV GGGTHR+GQGAF
Sbjct: 63 HQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAF 95
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 117 bits (282), Expect = 3e-27
Identities = 58/91 (63%), Positives = 69/91 (75%), Gaps = 2/91 (2%)
Frame = +2
Query: 107 RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 280
RPLVSV + + + T ++ L VF+AP+RPD+V VH +S N RQPY VS+ AGHQ
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQ 65
Query: 281 TSAESWGTGRAVXRIPRVRGGGTHRSGQGAF 373
TSAESWGTGRAV RIPRV GGGTHR+GQGAF
Sbjct: 66 TSAESWGTGRAVSRIPRVPGGGTHRAGQGAF 96
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 33.9 bits (74), Expect = 0.042
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = +1
Query: 70 ASLK*RNESIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 225
ASL N I +PTF +G K G S + + GAHT G + C F
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 33.1 bits (72), Expect = 0.073
Identities = 20/52 (38%), Positives = 23/52 (44%)
Frame = +1
Query: 70 ASLK*RNESIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 225
ASL N + P+F V G SQA V + GAHT G Q C F
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175
>11_01_0072 +
570345-570476,570640-570831,571095-571260,571487-571872
Length = 291
Score = 31.5 bits (68), Expect = 0.22
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +1
Query: 70 ASLK*RNESIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 225
ASL N I +PT +G K G S + + GAHT G + C F
Sbjct: 126 ASLDTANNDIPAPTLDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>03_05_0366 - 23505755-23506441
Length = 228
Score = 30.7 bits (66), Expect = 0.39
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 173 FVFKAPIRPDLVNDVHVSMSKNSR-QPYCVSKEAGHQTSAESWGTGRAVXRIPRVRGGGT 349
++ AP D +V S + R P C S E + +AES TG A R R+ G T
Sbjct: 108 WIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPT 167
Query: 350 HRSGQGA 370
+ + + A
Sbjct: 168 NDNDEEA 174
>08_02_0105 +
12448808-12449152,12449218-12449409,12449520-12449685,
12449771-12450201
Length = 377
Score = 29.1 bits (62), Expect = 1.2
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +1
Query: 70 ASLK*RNESIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 225
ASL+ N ++ +PT V ++ G S V + GAHT G + C+ F
Sbjct: 197 ASLQGANTNLPAPTSGVATLVQKFRNVGLSAKDMVALSGAHTIGKAR-CTTF 247
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 28.7 bits (61), Expect = 1.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 287 AESWGTGRAVXRIPRVRGGGTHR 355
A+SW TGRA + R R GG R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRR 58
>12_02_0488 +
19587337-19587648,19587739-19587798,19587876-19587941,
19588017-19588082,19588253-19588345
Length = 198
Score = 27.9 bits (59), Expect = 2.7
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +2
Query: 182 KAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVXRIPRV 334
K ++ D N++ + SK R VSK H SAES + A R R+
Sbjct: 80 KRKVQMDTENELMTNRSKEVRTKMSVSKACKHSVSAESSQSYYAKNRRQRI 130
>08_02_1285 - 25881091-25881798
Length = 235
Score = 27.9 bits (59), Expect = 2.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 133 KERDGAGCSQAPPVRVQGAHTSGPG 207
+E DG G ++A V +GAH +G G
Sbjct: 173 EEEDGEGSAEAMEVEEEGAHLAGAG 197
>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
Length = 390
Score = 27.9 bits (59), Expect = 2.7
Identities = 10/34 (29%), Positives = 14/34 (41%)
Frame = -2
Query: 365 PDRTYEYHHHGHAEFGXQHVRYPMIRHWFGDQPP 264
P + +HHHGH + + H G PP
Sbjct: 33 PQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPPPP 66
>11_06_0209 +
21282079-21282369,21287029-21287137,21287462-21287580,
21287722-21287829,21287943-21288062,21288838-21289011,
21289111-21289212
Length = 340
Score = 27.5 bits (58), Expect = 3.6
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +2
Query: 176 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRA---VXRIPRVRGGG 346
VF PIR D+V+ V +K + ++ +Q GTGRA R P+ RGG
Sbjct: 160 VFDVPIRKDIVHRVGTHSTKTISEVSGTGRKPYNQK-----GTGRARHGTLRGPQFRGGA 214
Query: 347 T 349
T
Sbjct: 215 T 215
>03_01_0147 - 1170481-1171260,1171332-1171511
Length = 319
Score = 27.5 bits (58), Expect = 3.6
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 64 GIASLK*R-NESIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 225
G ASL+ ++I +PTF++ + G +Q V + GAHT G C+ F
Sbjct: 139 GTASLEPEVADNIPAPTFTLDQLTQSFAAKGLTQEEMVTLSGAHTVGRAH-CTSF 192
>09_06_0153 - 21243108-21245660
Length = 850
Score = 27.1 bits (57), Expect = 4.8
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -1
Query: 156 APCTVSLFSEYTDTKGRATDRLISLL*RSYTSEIYTNSGDK 34
APCTV +F++ +G A+ RL + + S + N GD+
Sbjct: 612 APCTVGVFADRPFWRGGASFRLPTKISTSEETTAARNQGDQ 652
>04_04_1394 -
33213852-33214406,33214487-33214678,33214777-33214826,
33215002-33215218
Length = 337
Score = 27.1 bits (57), Expect = 4.8
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 61 GGIASLK*RNESIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 225
G ASL N + PT + K G + + + + GAHT G + C+ F
Sbjct: 168 GTTASLDAANNDLPPPTSDLADLIKSFSDKGLTASDMIALSGAHTIGQAR-CTNF 221
>11_01_0074 +
582210-582434,582521-582712,582785-582950,584013-584404
Length = 324
Score = 26.6 bits (56), Expect = 6.3
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 70 ASLK*RNESIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 225
ASL N +I PT + G SQ V + G+HT G + C+ F
Sbjct: 157 ASLSGANNNIPPPTSGLANLTSLFAAQGLSQKDMVALSGSHTIGQAR-CTNF 207
>05_03_0419 -
13707843-13707860,13707936-13708010,13708251-13708286,
13709718-13709765,13710246-13710326,13710503-13710554,
13710671-13710730,13711266-13711346,13711461-13711577,
13711714-13711754,13711981-13712059,13712136-13712292,
13712586-13712718,13712799-13712926,13715152-13715314
Length = 422
Score = 26.6 bits (56), Expect = 6.3
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = -3
Query: 286 TGLVTSLLAHAVGLPRVLGHRNVNIIDQVR-TYGRLEHEREGLGCTLHRL 140
TG+ +L+ + VG+P+VL ++ I Q+ G +E +RE G L+ L
Sbjct: 205 TGVYKTLVRYLVGVPQVL----LDFIRQINDDNGPMEEQRERYGPALYTL 250
>09_02_0384 - 8294914-8297817
Length = 967
Score = 26.2 bits (55), Expect = 8.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 113 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSK 235
LV +Y S V PLP + + PIR LV +H+++ K
Sbjct: 116 LVDLYDRGSFEVVSVDGPLPSIEEKPIREKLVG-MHLNVMK 155
>07_03_1169 + 24501594-24502826
Length = 410
Score = 26.2 bits (55), Expect = 8.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 115 SVGVFRKERDGAGCSQAPPVR 177
++G RK DG G Q PP R
Sbjct: 13 AIGAARKRHDGGGGEQQPPFR 33
>06_03_0807 - 24789843-24789859,24791536-24791613,24793589-24793709
Length = 71
Score = 26.2 bits (55), Expect = 8.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 243 LEFLDIET*TSLTRSGRMGALNTNGRGLAAPCTVSLFSE 127
LE L E S+ R GR+ + G+G PC+ ++ E
Sbjct: 28 LEALQEEESVSVQRRGRVENSSREGKGRVMPCSAYVWGE 66
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 26.2 bits (55), Expect = 8.4
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +2
Query: 272 GHQTSAESWGTGRAVXRIPRVRGGGTHRSGQG 367
G + S W G A VRGGG RSG G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGG 106
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,633,530
Number of Sequences: 37544
Number of extensions: 251579
Number of successful extensions: 736
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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