Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28h12
         (375 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    26   0.13 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   1.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   4.8  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   6.3  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   6.3  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 26.2 bits (55), Expect = 0.13
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +2

Query: 14  PWHGGWSLSPLLVYISEV*LR*S--SEMSLSVARPLVSVYSEKSETVQGAAKPLPFVFKA 187
           PW  G SL  +  Y+SE+    S  + ++ S+ R L   +  +  T+ G  +P+ F+  A
Sbjct: 106 PWVLGVSLCKIRAYVSEMSSYVSVLTIVAFSMERYLAICHPLRVYTISGLKRPIRFILAA 165


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 347 YHHHGHAEFGXQHVRY 300
           +HHH H     QH+ Y
Sbjct: 351 HHHHHHQTQSLQHLHY 366


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 11   PPWHGGWSLSPLLVY 55
            PPW  G  ++P L+Y
Sbjct: 997  PPWLEGVHVTPELIY 1011


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +2

Query: 14  PWHGGWSLSPLLVYISE 64
           PW  G  +  L  Y+SE
Sbjct: 99  PWQWGLGICKLRAYVSE 115


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = +2

Query: 182 KAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSA 289
           K P++   + D+ + M    RQP+ +   A  + +A
Sbjct: 59  KLPVKAITLPDLSIPMQLGRRQPFSLFIPAHRKIAA 94


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,140
Number of Sequences: 438
Number of extensions: 2124
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9052365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)